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[183601_at]

Description C06E7.5 /REP_DB=WormBase Gene ID /WP=CE03961 /TR=Q17733 /GB=AAA82282.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 956
1 2 3 4 range
A 161.9
(-2.3)
A 		899.1
(3)
P 		762.4
(2)
P 		58
(-3)
A 		841
B 187.2
(-2)
A 		979.2
(3)
P 		789.4
(1.8)
P 		23
(-3)
A 		956
C 172
(-2.2)
A 		956
(3)
P 		958.6
(3)
P 		57.1
(-3)
A 		902
avr 173.7
(-2.1) 		944.8
(3) 		836.8
(2.3) 		46
(-3) 		899

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 646
1 2 3 4 5 6 range
A 154.9
(-2.8)
A 		761
(3)
P 		137.1
(-3)
M 		371
(-0.8)
P 		279.7
(-1.6)
A 		152.8
(-2.8)
A 		624
B 165.3
(-2.1)
A 		465.4
(3)
P 		269.4
(-0.4)
M 		293.5
(0.1)
A 		243.5
(-0.8)
P 		115.2
(-3)
A 		350
C 168.8
(-2.3)
A 		491.3
(3)
P 		323.7
(0.2)
P 		287.1
(-0.4)
P 		262.6
(-0.8)
P 		129.5
(-3)
A 		362
avr 163
(-2.6) 		572.6
(3) 		243.4
(-1.5) 		317.2
(-0.5) 		261.9
(-1.2) 		132.5
(-3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 58.9
(-1.4)
A 		195.2
(2.9)
P 		199.3
(3)
P 		8.5
(-3)
A 		191
B 59.7
(-1.6)
A 		241.8
(3)
P 		182.9
(1.5)
P 		4.9
(-3)
A 		237
C 56.9
(-2.1)
A 		274.9
(1.9)
P 		334.1
(3)
P 		9.6
(-3)
A 		325
avr 58.5
(-1.7) 		237.3
(3) 		238.8
(3) 		7.7
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 28.6
(-3)
A 		270.6
(3)
P 		29.9
(-3)
M 		94.1
(-1.4)
P 		84.4
(-1.6)
A 		37.2
(-2.8)
A 		242
B 57.5
(-2.2)
A 		154.9
(3)
P 		65.4
(-1.8)
M 		77.7
(-1.1)
A 		98.9
(-0)
P 		43
(-3)
A 		112
C 62.6
(-1.9)
A 		149.9
(3)
P 		82.4
(-0.8)
P 		57.7
(-2.2)
P 		85
(-0.7)
P 		43.4
(-3)
A 		107
avr 49.6
(-2.7) 		191.8
(3) 		59.2
(-2.3) 		76.5
(-1.6) 		89.4
(-1.1) 		41.2
(-3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10682
Sequence Type Exemplar sequence
Representative Public ID C06E7.5 NCBI
Target Description C06E7.5 /REP_DB=WormBase Gene ID /WP=CE03961 /TR=Q17733 /GB=AAA82282.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068473(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068473 NCBI Caenorhabditis elegans C06E7.4 (C06E7.4) mRNA, complete cds. 9/11 A 
SNAP00000039819 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5859431:5859961:-1 9/11 None
GENEFINDER00000039823 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5858384:5862141:-1 10/11 None
C06E7.4 ENSEMBL cdna:known chromosome:CEL140:IV:5850824:5859961:-1 gene:C06E7.4 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5858804-5860322(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E7.4
Entrez Gene 177356 Entrez gene
SwissProt Q17732 EMBL-EBI
WormBase CE29026 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82282 Hypothetical protein C06E7.4 [Caenorhabditis elegans] ref|NP_500874.1| C06E7.4 [Caenorhabditis elegans] 0.0
blast CAE72640 Hypothetical protein CBG19842 [Caenorhabditis briggsae] 0.0
blast AAA82282 Hypothetical protein C06E7.4 [Caenorhabditis elegans] ref|NP_500874.1| C06E7.4 [Caenorhabditis elegans] 6.0E-62
blast AAA82282 Hypothetical protein C06E7.4 [Caenorhabditis elegans] ref|NP_500874.1| C06E7.4 [Caenorhabditis elegans] 3.0E-61
blast CAE72640 Hypothetical protein CBG19842 [Caenorhabditis briggsae] 3.0E-57
blast CAE72640 Hypothetical protein CBG19842 [Caenorhabditis briggsae] 1.0E-56
Sequence
Target Sequence 
>C. ELEGANS:183601_AT
tgcacatctaacagttcctacgtgttgtatttatttcaaagttatcatgaaacaatggga
aaccgaagctcgtcacactacccgcctcctccgcattggatgcatcaaaggacatcctat
tcaacaactacttctccatatccagaagcaaaacaaagaccaattgctccaggagcattc
gctgaaccttatatgcatcacaatccacatcatccacaatcaaaagctcaaatgagacga
tcaatgatctctctgaatgcagattctggatacatgggaggccctgattctgaaaggtta
cgacaaatgagaggatcaagaatgtcattgaatcaaattgatttcgaaccagcaatgatg
cctccacctaggatattgatacctcctgatgcaaagacattgaagaaattggagaagatg
gagaagaagcatcagaaattaatgaagaaattgggagcaagaggaattccgattcagatg
cctgttccaccaccaccaccaatgcatccaatgtactccagagctataagctatgatgat
ttacacagaaattttttgagtttttttcgagttgctccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACATCTAACAGTTCCTACGTGT 112 577 82 Antisense
TGGGAAACCGAAGCTCGTCACACTA 619 551 137 Antisense
CCTCCTCCGCATTGGATGCATCAAA 458 267 166 Antisense
GACATCCTATTCAACAACTACTTCT 304 369 192 Antisense
CTCCAGGAGCATTCGCTGAACCTTA 591 227 248 Antisense
TATGCATCACAATCCACATCATCCA 414 657 273 Antisense
GATACATGGGAGGCCCTGATTCTGA 613 423 350 Antisense
GCAATGATGCCTCCACCTAGGATAT 649 321 433 Antisense
GAATTCCGATTCAGATGCCTGTTCC 17 323 545 Antisense
ATGCATCCAATGTACTCCAGAGCTA 440 43 583 Antisense
GAGTTTTTTTCGAGTTGCTCCACAA 247 397 639 Antisense
Sequence Source Affymetrix Proprietary Database