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[183600_at]

Description F45E1.5 /REP_DB=WormBase Gene ID /WP=CE10486 /TR=Q20425 /GB=AAB04901.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_total > 31      4grp_total > 52      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 129.7
(0.9)
P 		150.5
(3)
P 		115.8
(-0.6)
P 		91.9
(-3)
P 		59
B 178
(3)
P 		167.9
(2.3)
P 		171.4
(2.6)
P 		85.9
(-3)
P 		92
C 178.7
(1.6)
P 		202
(3)
P 		141.4
(-0.6)
P 		101.8
(-3)
P 		100
avr 162.1
(2.1) 		173.5
(3) 		142.9
(0.7) 		93.2
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 170.9
(0.7)
P 		164.2
(0.4)
P 		227.8
(3)
P 		120.9
(-1.4)
P 		104.6
(-2)
P 		80.7
(-3)
A 		147
B 114.5
(-0.3)
P 		165.2
(1.5)
P 		208.7
(3)
P 		120.4
(-0.1)
P 		78.2
(-1.6)
P 		36.7
(-3)
A 		172
C 129.1
(0.3)
P 		167.9
(3)
P 		141.4
(1.2)
P 		148.5
(1.7)
P 		118.8
(-0.4)
A 		80.2
(-3)
P 		88
avr 138.2
(0.4) 		165.8
(1.7) 		192.6
(3) 		129.9
(0) 		100.5
(-1.4) 		65.9
(-3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 47.2
(3)
P 		32.7
(0.4)
P 		30.3
(-0)
P 		13.4
(-3)
P 		34
B 56.8
(3)
P 		41.5
(0.6)
P 		39.7
(0.3)
P 		18.3
(-3)
P 		39
C 59.1
(3)
P 		58.1
(2.9)
P 		49.3
(1.6)
P 		17.2
(-3)
P 		42
avr 54.4
(3) 		44.1
(1.4) 		39.8
(0.7) 		16.3
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 31.5
(-1.2)
P 		58.4
(3)
P 		49.6
(1.6)
P 		30.7
(-1.3)
P 		31.6
(-1.2)
P 		19.7
(-3)
A 		39
B 39.8
(0.8)
P 		55
(3)
P 		50.7
(2.4)
P 		31.9
(-0.4)
P 		31.8
(-0.4)
P 		13.7
(-3)
A 		41
C 47.9
(2.2)
P 		51.2
(3)
P 		36
(-0.7)
P 		29.9
(-2.2)
P 		38.4
(-0.1)
A 		26.8
(-3)
P 		24
avr 39.7
(0.4) 		54.9
(3) 		45.4
(1.4) 		30.8
(-1.2) 		33.9
(-0.6) 		20.1
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183600_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15998
Sequence Type Exemplar sequence
Representative Public ID F45E1.5 NCBI
Target Description F45E1.5 /REP_DB=WormBase Gene ID /WP=CE10486 /TR=Q20425 /GB=AAB04901.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076942 NCBI Caenorhabditis elegans F45E1.5 (F45E1.5) mRNA, complete cds. 11/11 None
GENEFINDER00000004157 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7976642:7980167:1 11/11 None
F45E1.5 ENSEMBL cdna:known chromosome:CEL140:X:7974397:7980404:1 gene:F45E1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004146 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7974395-7980166(+) 97.25 100.0
Public Domain and Genome References
Gene Title
Ensembl F45E1.5
Entrez Gene 185794 Entrez gene
SwissProt Q20425 EMBL-EBI
WormBase CE38519 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04901 Hypothetical protein F45E1.5 [Caenorhabditis elegans] ref|NP_509343.2| F45E1.5 [Caenorhabditis elegans] 0.0
blast CAE70328 Hypothetical protein CBG16861 [Caenorhabditis briggsae] 7.0E-11
blast CAE70328 Hypothetical protein CBG16861 [Caenorhabditis briggsae] 8.0E-11
Sequence
Target Sequence 
>C. ELEGANS:183600_AT
acttgcgcgatattgttgaactaccagaatgttcaatggaattcattcaaatcatcaatc
agcacctcatgcctcacggtcttcaagttattgatttgagacgcagatcagaggaagtgc
tcggacaaccgccattataccatgatgattacgagatggccaatcacaccattgacgcaa
tatcacgttcagttgaagctctcaattccatcaaaaacacagcaaaatatttcatcgttt
atgctatttatgcagacacagtaccaatgtacatttaccaagcaattgtccgattcaagc
ctgggcttccaatcaattcagctgactggattgacgatggaaaatcgcgattagaaattg
aagaaccagacatggagcctgttaacactcttgacagtgtttgctggttaatgcaaatca
gagagtatcggtacaaggttgccgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGCGCGATATTGTTGAACTACC 8 103 1280 Antisense
AATCATCAATCAGCACCTCATGCCT 115 171 1329 Antisense
ATGCCTCACGGTCTTCAAGTTATTG 297 39 1348 Antisense
CAGAGGAAGTGCTCGGACAACCGCC 350 205 1388 Antisense
GGACAACCGCCATTATACCATGATG 1 527 1402 Antisense
GATGGCCAATCACACCATTGACGCA 510 405 1434 Antisense
AAGCTCTCAATTCCATCAAAAACAC 247 151 1475 Antisense
GCAATTGTCCGATTCAAGCCTGGGC 520 323 1561 Antisense
GCCTGGGCTTCCAATCAATTCAGCT 434 283 1578 Antisense
CATGGAGCCTGTTAACACTCTTGAC 482 209 1650 Antisense
GAGTATCGGTACAAGGTTGCCGCAG 474 399 1702 Antisense
Sequence Source Affymetrix Proprietary Database