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[183598_at]

Description K09E3.2 /REP_DB=WormBase Gene ID /WP=CE04740 /TR=Q21398 /GB=AAA82375.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 5.1
(-3)
A 		5.5
(-2.9)
A 		38.4
(1.8)
A 		46.5
(3)
A 		41
B 5.6
(-3)
A 		7.5
(-2.4)
A 		24.6
(3)
A 		9
(-1.9)
A 		19
C 6.8
(-2.3)
A 		28.5
(1.8)
A 		3
(-3)
A 		35.2
(3)
A 		32
avr 5.8
(-3) 		13.8
(-1) 		22
(1) 		30.2
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 4.8
(-1.7)
A 		13.8
(3)
A 		3.2
(-2.5)
A 		2.3
(-3)
A 		3.3
(-2.5)
A 		2.8
(-2.7)
A 		12
B 3.7
(-2.7)
A 		6.2
(-2.1)
A 		28.3
(3)
A 		12.5
(-0.7)
A 		11.5
(-0.9)
A 		2.4
(-3)
A 		26
C 3.8
(-2.4)
A 		3.7
(-2.4)
A 		19.1
(3)
A 		3
(-2.7)
A 		5.2
(-1.9)
A 		2.1
(-3)
A 		17
avr 4.1
(-2.3) 		7.9
(-0.7) 		16.9
(3) 		5.9
(-1.6) 		6.7
(-1.2) 		2.4
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.8
(-2.6)
A 		1.2
(-3)
A 		10
(3)
A 		6.8
(0.8)
A 		9
B 1.8
(-3)
A 		1.8
(-3)
A 		5.7
(3)
A 		1.9
(-2.8)
A 		4
C 2.3
(-1.9)
A 		8.2
(3)
A 		1
(-3)
A 		5.9
(1.1)
A 		7
avr 2
(-3) 		3.7
(-0.2) 		5.6
(3) 		4.9
(1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.9
(-2.6)
A 		4.9
(3)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		1
(-2.4)
A 		0.7
(-2.9)
A 		4
B 1.3
(-2.6)
A 		2.1
(-1.8)
A 		6.9
(3)
A 		3.3
(-0.6)
A 		4.7
(0.8)
A 		0.9
(-3)
A 		6
C 1.4
(-1.9)
A 		1.1
(-2.3)
A 		4.9
(3)
A 		0.6
(-3)
A 		1.7
(-1.5)
A 		0.7
(-2.9)
A 		4
avr 1.2
(-2.3) 		2.7
(0.4) 		4.2
(3) 		1.5
(-1.8) 		2.5
(-0) 		0.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18026
Sequence Type Exemplar sequence
Representative Public ID K09E3.2 NCBI
Target Description K09E3.2 /REP_DB=WormBase Gene ID /WP=CE04740 /TR=Q21398 /GB=AAA82375.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078371 NCBI Caenorhabditis elegans K09E3.2 (K09E3.2) mRNA, complete cds. 11/11 None
SNAP00000022139 ENSEMBL cdna:SNAP chromosome:CEL140:X:17117571:17117900:1 11/11 None
K09E3.2 ENSEMBL cdna:known chromosome:CEL140:X:17117571:17117900:1 gene:K09E3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026839 5/11 Cross Hyb Matching Probes None
GENEFINDER00000027207 5/11 Cross Hyb Matching Probes None
GENEFINDER00000015142 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023235 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl K09E3.2
Entrez Gene 187219 Entrez gene
SwissProt Q21398 EMBL-EBI
WormBase CE04740 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82375 Hypothetical protein K09E3.2 [Caenorhabditis elegans] ref|NP_510772.1| K09E3.2 [Caenorhabditis elegans] 2.0E-61
blast NP_001022010 C33C12.11 [Caenorhabditis elegans] gb|AAY55863.1| Hypothetical protein C33C12.11 [Caenorhabditis elegans] 2.0E-42
Sequence
Target Sequence 
>C. ELEGANS:183598_AT
gacgaagaggtgcgtggacgacgacaggaccctagccatgttcgagatattctccttcga
gagattctccttcggctgctgctgcttcttggctcatgacgacgacgggtcacttgctgg
ccaacttcgggacttcttctcttcggagaaccgctgcccgctgttggcccaccaggacga
cgggacgctggccaatttcgtgatcttctccttcatccgcttttggctcttggctcatga
caacgatcgggacactgaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAAGAGGTGCGTGGACGACGAC 353 355 15 Antisense
GAGGTGCGTGGACGACGACAGGACC 561 401 21 Antisense
GACCCTAGCCATGTTCGAGATATTC 90 381 42 Antisense
GATATTCTCCTTCGAGAGATTCTCC 417 427 60 Antisense
CCTTCGAGAGATTCTCCTTCGGCTG 294 269 68 Antisense
CTTGGCTCATGACGACGACGGGTCA 638 3 102 Antisense
CATGACGACGACGGGTCACTTGCTG 476 205 109 Antisense
GACTTCTTCTCTTCGGAGAACCGCT 198 371 145 Antisense
CTTTTGGCTCTTGGCTCATGACAAC 188 223 234 Antisense
GCTCTTGGCTCATGACAACGATCGG 248 301 240 Antisense
TGACAACGATCGGGACACTGACCAG 545 571 252 Antisense
Sequence Source Affymetrix Proprietary Database