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[183597_at]

Description F58E10.4 /REP_DB=WormBase Gene ID /WP=CE18786 /TR=Q9XUW8 /GB=CAB04515.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 97      6grp_total > 68      4grp_total > 13      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 886
1 2 3 4 range
A 922.8
(0.3)
P 		434.4
(-3)
P 		538.3
(-2.3)
P 		1320.8
(3)
P 		886
B 883.3
(0.1)
P 		459.2
(-3)
P 		558
(-2.3)
P 		1286.6
(3)
P 		827
C 979.4
(1.1)
P 		507.7
(-2.9)
P 		492
(-3)
P 		1204.5
(3)
P 		713
avr 928.5
(0.4) 		467.1
(-3) 		529.4
(-2.5) 		1270.6
(3) 		804

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1193
1 2 3 4 5 6 range
A 982.5
(-1.1)
P 		661.1
(-3)
P 		731.7
(-2.5)
P 		656
(-3)
P 		876.8
(-1.7)
P 		1664.2
(3)
P 		1008
B 893.3
(-1.2)
P 		586.2
(-3)
P 		592.3
(-3)
P 		761.1
(-2)
P 		806
(-1.7)
P 		1630.5
(3)
P 		1044
C 852
(-1.4)
P 		529
(-3)
P 		584.7
(-2.7)
P 		770.5
(-1.8)
P 		718.4
(-2)
P 		1722.4
(3)
P 		1193
avr 909.3
(-1.2) 		592.1
(-3) 		636.2
(-2.8) 		729.2
(-2.2) 		800.4
(-1.8) 		1672.4
(3) 		1080
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 336
(3)
P 		94.3
(-3)
P 		140.7
(-1.8)
P 		193.3
(-0.5)
P 		242
B 281.7
(3)
P 		113.4
(-3)
P 		129.3
(-2.4)
P 		274.2
(2.7)
P 		168
C 324.2
(3)
P 		146
(-3)
P 		171.5
(-2.1)
P 		203.1
(-1.1)
P 		178
avr 314
(3) 		117.9
(-3) 		147.2
(-2.1) 		223.5
(0.2) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 464
1 2 3 4 5 6 range
A 181.1
(-2.5)
P 		235.1
(-1.2)
P 		159.3
(-3)
P 		166.4
(-2.8)
P 		264.6
(-0.4)
P 		405.2
(3)
P 		246
B 310.8
(-0.8)
P 		195.1
(-2.3)
P 		143.8
(-3)
P 		201.6
(-2.3)
P 		327.5
(-0.6)
P 		608
(3)
P 		464
C 315.8
(-0.7)
P 		161.4
(-2.8)
P 		148.8
(-3)
P 		154.9
(-2.9)
P 		232.5
(-1.8)
P 		576.6
(3)
P 		428
avr 269.2
(-1.1) 		197.2
(-2.3) 		150.6
(-3) 		174.3
(-2.6) 		274.9
(-1) 		529.9
(3) 		379
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12646
Sequence Type Exemplar sequence
Representative Public ID F58E10.4 NCBI
Target Description F58E10.4 /REP_DB=WormBase Gene ID /WP=CE18786 /TR=Q9XUW8 /GB=CAB04515.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074078 NCBI Caenorhabditis elegans Arsenite Inducible Protein family member (aip-1) (aip-1) mRNA, complete cds. 11/11 None
SNAP00000001490 ENSEMBL cdna:SNAP chromosome:CEL140:V:14015167:14016028:1 11/11 None
GENEFINDER00000001500 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14015167:14016028:1 11/11 None
F58E10.4 ENSEMBL cdna:known chromosome:CEL140:V:14014921:14016232:1 gene:F58E10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14015166-14016028(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol aip-1
Ensembl F58E10.4
Entrez Gene 179898 Entrez gene
SwissProt Q9XUW8 EMBL-EBI
WormBase CE18786 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18836.1.S1_AT similar to CG12795-PA cfa
CANINE_2:CFAAFFX.23226.1.S1_AT similar to CG12795-PA cfa
CANINE_2:CFAAFFX.23226.1.S1_S_AT similar to CG12795-PA cfa
CANINE_2:CFAAFFX.23227.1.S1_AT similar to CG12795-PA cfa
DROSOPHILA_2:1637606_AT dm
DROSGENOME1:145713_AT dm
CHICKEN:GGA.8202.2.S1_A_AT similar to Hypothetical protein MGC66295 gga
HU35KSUBA:RC_AA134532_AT zinc finger, AN1-type domain 2B hs
U133_X3P:HS.294143.0.A1_3P_AT zinc finger, AN1-type domain 2B hs
HG-U133_PLUS_2:226168_AT zinc finger, AN1-type domain 2B hs
HG-U133B:226168_AT zinc finger, AN1-type domain 2B hs
HG-U95C:63891_AT zinc finger, AN1-type domain 2B hs
HG-U95C:63892_AT zinc finger, AN1-type domain 2B hs
HG-U95C:65090_AT zinc finger, AN1-type domain 2B hs
HG-U95C:65091_G_AT zinc finger, AN1-type domain 2B hs
HG-U95C:61337_S_AT Zinc finger, AN1-type domain 2B hs
MOUSE430_2:1424521_AT zinc finger, AN1 type domain 2B mm
MOE430A:1424521_AT zinc finger, AN1 type domain 2B mm
MOUSE430A_2:1424521_AT zinc finger, AN1 type domain 2B mm
MG-U74BV2:162817_AT zinc finger, AN1 type domain 2B mm
MOE430A:1451390_S_AT zinc finger, AN1 type domain 2B mm
MOUSE430A_2:1451390_S_AT zinc finger, AN1 type domain 2B mm
MOUSE430_2:1451390_S_AT zinc finger, AN1 type domain 2B mm
MU19KSUBC:TC34977_AT Zinc finger, AN1 type domain 2B (Zfand2b), mRNA mm
MU19KSUBC:TC34977_G_AT Zinc finger, AN1 type domain 2B (Zfand2b), mRNA mm
RAE230A:1373606_AT similar to RIKEN cDNA 1110060O18 (predicted) rn
RAT230_2:1373606_AT similar to RIKEN cDNA 1110060O18 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB04515 Hypothetical protein F58E10.4 [Caenorhabditis elegans] ref|NP_506479.1| Arsenite Inducible Protein family member (aip-1) [Caenorhabditis elegans] 1.0E-121
blast AAR89635 arsenite inducible RNA associated protein (aip-1) [Caenorhabditis elegans] 1.0E-121
blast CAE66169 Hypothetical protein CBG11407 [Caenorhabditis briggsae] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:183597_AT
atggcggagttcccaaatctcggaaagcactgtgagagcacagtttgcaacagacttgat
tttcttccaatcaaatgctccggttgtggacatttctactgctcagagcacttcacattt
gaggctcataattgtccgactggctcaagaatttccgttcaagttcctatttgtcctata
tgtgagaagccagttccaacgccgaaagatgtcaatgttgatcaacaagtcaatgagcac
attcagaacaattgtcagactccgaaacgtgcaaaagtatattcaaacgcgtgtaccgtc
ccaaaatgcaagaagaaagagctggtagccatgaattgctcaaaatgtcgaaacaactac
tgcctttctcacagacacgagcgggatcacagttgtgagcgaaaagttggcgaaatgaag
ataaatcagaaaaagagctggacggattcaatcacatcaatcgcgcgttcccgaatgaat
ccatgttccgcacaagcaagaacagagggagatgaagctctggctcgttctctacaacaa
gaagaatacaatcgagttgcaccgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGGAGTTCCCAAATCTCGGAA 154 53 13 Antisense
TCTTCCAATCAAATGCTCCGGTTGT 93 619 75 Antisense
GTTGTGGACATTTCTACTGCTCAGA 500 437 95 Antisense
ACTGCTCAGAGCACTTCACATTTGA 258 99 110 Antisense
TGAGGCTCATAATTGTCCGACTGGC 589 567 132 Antisense
CCGACTGGCTCAAGAATTTCCGTTC 523 261 148 Antisense
TTCCGTTCAAGTTCCTATTTGTCCT 248 697 165 Antisense
TCGAAACAACTACTGCCTTTCTCAC 453 601 360 Antisense
ATCAATCGCGCGTTCCCGAATGAAT 639 25 468 Antisense
AATGAATCCATGTTCCGCACAAGCA 342 165 486 Antisense
AGAATACAATCGAGTTGCACCGCCG 583 75 555 Antisense
Sequence Source Affymetrix Proprietary Database