[Home] | [Total List]

[183596_at]

Description R02F2.5 /REP_DB=WormBase Gene ID /WP=CE00684 /TR=Q21648 /GB=AAA50721.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 42.8
(-3)
A 		77.5
(2.7)
A 		51.5
(-1.6)
A 		79.6
(3)
A 		37
B 16.2
(-1.4)
A 		45.5
(3)
A 		41.1
(2.3)
A 		5.4
(-3)
A 		40
C 14.2
(-3)
A 		73.8
(3)
A 		24.4
(-2)
A 		41.8
(-0.2)
A 		60
avr 24.4
(-3) 		65.6
(3) 		39
(-0.9) 		42.3
(-0.4) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 5.1
(-3)
A 		43.1
(0)
A 		32.9
(-0.8)
A 		51.1
(0.6)
A 		81
(3)
A 		19.7
(-1.8)
A 		76
B 26.1
(-0.8)
A 		9.3
(-3)
A 		54.7
(3)
A 		22.6
(-1.2)
A 		27.4
(-0.6)
A 		42.4
(1.4)
A 		45
C 16.9
(-2.8)
A 		42
(-0.1)
A 		14.9
(-3)
A 		71.9
(3)
A 		25.5
(-1.9)
A 		33.5
(-1)
A 		57
avr 16
(-3) 		31.5
(-0.1) 		34.2
(0.4) 		48.5
(3) 		44.6
(2.3) 		31.9
(-0.1) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15.6
(1.6)
A 		16.8
(3)
A 		13.5
(-0.9)
A 		11.7
(-3)
A 		5
B 5.2
(-0.6)
A 		11.2
(3)
A 		9.5
(2)
A 		1.1
(-3)
A 		10
C 4.7
(-3)
A 		21.2
(3)
A 		8.5
(-1.6)
A 		7.1
(-2.1)
A 		17
avr 8.5
(-1.8) 		16.4
(3) 		10.5
(-0.6) 		6.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.9
(-3)
A 		15.3
(0.7)
A 		7.2
(-1.4)
A 		13
(0.1)
A 		24.4
(3)
A 		4.8
(-2)
A 		24
B 9.1
(-0.2)
A 		3.1
(-3)
A 		13.3
(1.8)
A 		6
(-1.6)
A 		11.1
(0.8)
A 		15.8
(3)
A 		13
C 6.2
(-1.7)
A 		12.8
(2)
A 		3.8
(-3)
A 		14.5
(3)
A 		8.2
(-0.5)
A 		11.2
(1.1)
A 		11
avr 5.4
(-3) 		10.4
(0.3) 		8.1
(-1.2) 		11.2
(0.8) 		14.6
(3) 		10.6
(0.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183596_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7980
Sequence Type Exemplar sequence
Representative Public ID R02F2.5 NCBI
Target Description R02F2.5 /REP_DB=WormBase Gene ID /WP=CE00684 /TR=Q21648 /GB=AAA50721.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065768 NCBI Caenorhabditis elegans R02F2.5 (R02F2.5) mRNA, complete cds. 11/11 None
SNAP00000033068 ENSEMBL cdna:SNAP chromosome:CEL140:III:5479360:5485843:1 11/11 None
GENEFINDER00000033078 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5479360:5480234:1 11/11 None
R02F2.5 ENSEMBL cdna:known chromosome:CEL140:III:5479360:5480234:1 gene:R02F2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5479358-5480233(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02F2.5
Entrez Gene 187528 Entrez gene
SwissProt Q21648 EMBL-EBI
WormBase CE00684 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50720 Hypothetical protein R02F2.4 [Caenorhabditis elegans] ref|NP_498171.1| R02F2.4 [Caenorhabditis elegans] 0.0
blast CAE61363 Hypothetical protein CBG05204 [Caenorhabditis briggsae] 1.0E-125
blast CAE63882 Hypothetical protein CBG08448 [Caenorhabditis briggsae] 1.0E-110
blast AAA50721 Hypothetical protein R02F2.5 [Caenorhabditis elegans] ref|NP_498169.1| R02F2.5 [Caenorhabditis elegans] 3.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.5E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.0E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.8E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.7E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.6E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.3E-12
Sequence
Target Sequence 
>C. ELEGANS:183596_AT
aacaaccaacgctcggaccaaatgaatcgtcagcacactcaaccatctccaaacgcctcg
acagagcaaatggcataccctcgacagcagcctcaagggatcccacagggacctccaccg
gcctacgcacctccagcagcaccgaaagctcctgagaaagtcgtggagcccaaaaatagg
agagtaacgattgcagaaccaccggagagagttgcggagccatcaccaacgcctgaagat
ccagagctttttacttgcatcgaccaaacggagaaagaggttgaaaaggaagtggagaag
agaaagtctgctccgcgagccccagtcccggcacctacaccagctcctcaggcagctccc
caggcaactccggctgcacctgctcaagcttaccctcaacaacaacaagctgctcccgtg
gtctatggatcccaaccaatggtcatgggtgctgctccggtggctccagttgtcatggct
ccgccgccagtgatcatgagcccttatccatattatggaggtggtgttatgttcgaccca
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAACCAACGCTCGGACCAAATGA 200 115 55 Antisense
AATGAATCGTCAGCACACTCAACCA 184 165 75 Antisense
TCTCCAAACGCCTCGACAGAGCAAA 506 609 100 Antisense
TACCCTCGACAGCAGCCTCAAGGGA 650 645 130 Antisense
TCAAGGGATCCCACAGGGACCTCCA 391 629 147 Antisense
CAGCAGCACCGAAAGCTCCTGAGAA 535 203 188 Antisense
CGGAGAGAGTTGCGGAGCCATCACC 578 243 257 Antisense
GATCCAGAGCTTTTTACTTGCATCG 354 415 292 Antisense
AACCAATGGTCATGGGTGCTGCTCC 125 149 488 Antisense
CCAGTGATCATGAGCCCTTATCCAT 127 273 541 Antisense
GGAGGTGGTGTTATGTTCGACCCAT 625 515 571 Antisense
Sequence Source Affymetrix Proprietary Database