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[183595_at]

Description R03A10.3 /REP_DB=WormBase Gene ID /WP=CE06209 /TR=Q21657 /GB=CAA93672.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 31      6grp_total > 80      4grp_total > 24      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 109.8
(-3)
A 		120.2
(-2.3)
P 		147.5
(-0.3)
M 		194.9
(3)
P 		85
B 99.6
(-3)
A 		160.7
(1.5)
P 		180.7
(3)
P 		173.3
(2.5)
P 		81
C 120
(-3)
P 		163.3
(0.4)
A 		183.5
(2)
P 		196.9
(3)
P 		77
avr 109.8
(-3) 		148.1
(-0.1) 		170.6
(1.6) 		188.4
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 34.1
(-3)
A 		135.7
(2.4)
P 		77.7
(-0.7)
A 		147.4
(3)
P 		86.5
(-0.2)
A 		96.2
(0.3)
P 		113
B 71.8
(-3)
A 		100.5
(-0.4)
A 		115.8
(1.1)
A 		136.9
(3)
P 		110.3
(0.5)
A 		93.3
(-1)
A 		65
C 97
(1.9)
P 		78.1
(-0)
A 		83.8
(0.6)
A 		108.1
(3)
A 		48.1
(-3)
A 		100.1
(2.2)
P 		60
avr 67.6
(-3) 		104.8
(0.5) 		92.4
(-0.6) 		130.8
(3) 		81.6
(-1.7) 		96.5
(-0.3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 40
(3)
A 		26.1
(-3)
P 		38.6
(2.4)
M 		28.5
(-2)
P 		14
B 31.8
(-3)
A 		39.7
(1.7)
P 		41.9
(3)
P 		36.9
(0)
P 		10
C 39.7
(-1.7)
P 		46.9
(-0.3)
A 		64
(3)
P 		33.2
(-3)
P 		31
avr 37.2
(-1.3) 		37.6
(-1.2) 		48.2
(3) 		32.9
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 6.3
(-3)
A 		48.2
(3)
P 		16.9
(-1.5)
A 		37.4
(1.5)
P 		26.1
(-0.2)
A 		23.4
(-0.6)
P 		42
B 25
(-3)
A 		33.5
(-0.4)
A 		28.1
(-2.1)
A 		36.3
(0.4)
P 		44.8
(3)
A 		34.8
(-0)
A 		20
C 36
(3)
P 		23.8
(-0.6)
A 		21.3
(-1.3)
A 		21.7
(-1.2)
A 		15.6
(-3)
A 		33.5
(2.3)
P 		20
avr 22.4
(-2.9) 		35.2
(3) 		22.1
(-3) 		31.8
(1.4) 		28.8
(0.1) 		30.6
(0.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17565
Sequence Type Exemplar sequence
Representative Public ID R03A10.3 NCBI
Target Description R03A10.3 /REP_DB=WormBase Gene ID /WP=CE06209 /TR=Q21657 /GB=CAA93672.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078151(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078151 NCBI Caenorhabditis elegans R03A10.3 (R03A10.3) mRNA, complete cds. 11/11 None
SNAP00000023409 ENSEMBL cdna:SNAP chromosome:CEL140:X:15435824:15438383:-1 10/11 None
GENEFINDER00000023418 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15436746:15440711:-1 11/11 None
R03A10.3 ENSEMBL cdna:known chromosome:CEL140:X:15435601:15440711:-1 gene:R03A10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15437267-15440711(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03A10.3
Entrez Gene 187534 Entrez gene
SwissProt Q21657 EMBL-EBI
WormBase CE30560 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246325_AT molybdenum cofactor sulfurase (LOS5) (ABA3) at
CANINE_2:CFAAFFX.27238.1.S1_AT similar to molybdenum cofactor sulfurase cfa
CANINE_2:CFAAFFX.27247.1.S1_AT similar to molybdenum cofactor sulfurase cfa
CANINE_2:CFAAFFX.27247.1.S1_S_AT similar to molybdenum cofactor sulfurase cfa
DROSOPHILA_2:1631688_AT maroon-like dm
DROSGENOME1:153431_AT maroon-like dm
CHICKEN:GGA.19755.1.S1_AT similar to molybdenum cofactor sulfurase protein - human gga
CHICKEN:GGAAFFX.8356.1.S1_AT similar to molybdenum cofactor sulfurase protein - human gga
CHICKEN:GGAAFFX.8356.1.S1_S_AT similar to molybdenum cofactor sulfurase protein - human gga
HG-U133A:219959_AT molybdenum cofactor sulfurase hs
HG-U133_PLUS_2:219959_AT molybdenum cofactor sulfurase hs
HG-U133A_2:219959_AT molybdenum cofactor sulfurase hs
U133_X3P:G8923660_3P_AT molybdenum cofactor sulfurase hs
HG-U95D:81555_AT molybdenum cofactor sulfurase hs
HG-U133_PLUS_2:242997_AT Molybdenum cofactor sulfurase hs
HG-U133B:242997_AT Molybdenum cofactor sulfurase hs
HG-U95E:78453_AT Molybdenum cofactor sulfurase hs
U133_X3P:HS.259498.0.A1_3P_AT Molybdenum cofactor sulfurase hs
MU11KSUBA:C77687_RC_AT molybdenum cofactor sulfurase mm
MG-U74AV2:96151_AT molybdenum cofactor sulfurase mm
MG-U74AV2:161830_F_AT molybdenum cofactor sulfurase mm
MOE430A:1429352_AT molybdenum cofactor sulfurase mm
MOUSE430A_2:1429352_AT molybdenum cofactor sulfurase mm
MOUSE430_2:1429352_AT molybdenum cofactor sulfurase mm
RAE230A:1372683_AT molybdenum cofactor sulfurase (predicted) rn
RAT230_2:1372683_AT molybdenum cofactor sulfurase (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA93672 Hypothetical protein R03A10.3 [Caenorhabditis elegans] ref|NP_510552.2| R03A10.3 [Caenorhabditis elegans] 0.0
blast CAE63313 Hypothetical protein CBG07703 [Caenorhabditis briggsae] 0.0
blast CAA93672 Hypothetical protein R03A10.3 [Caenorhabditis elegans] ref|NP_510552.2| R03A10.3 [Caenorhabditis elegans] 1.0E-169
blast CAE63313 Hypothetical protein CBG07703 [Caenorhabditis briggsae] 1.0E-135
blast XP_394734 PREDICTED: similar to molybdenum cofactor sulfurase [Apis mellifera] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR005303 EMBL-EBI MOSC N-terminal beta barrel domain 2.1E-34
Pfam IPR005302 EMBL-EBI MOSC domain 1.2E-15
Pfam IPR005303 EMBL-EBI MOSC N-terminal beta barrel domain 8.2E-32
Pfam IPR005302 EMBL-EBI MOSC domain 1.2E-15
Sequence
Target Sequence 
>C. ELEGANS:183595_AT
gagaagatgtgcgccatttttggtattgaattgagaacaggatgtttttgcaatattggt
gcttgcaaaaaatacttagggatcacgtcagaaatgatccaggagaatatgagtaaaggc
aaacgatgtggagatgaaatagatttaattaatggaacaccaaccggtgctattcgaatt
tcatttggcaggacatccactgaacacgacatcactgctctagaacaaatgatcgacacc
tgctttacagagggtgaacatcaggctcaatcaaaaccagaccctatgaacatcgagtct
tactcaccaactgttgtaaacctgtttagttttcctattaaaagtgttggctcggtgggt
agaaaacggtatgagcttaccgctagaggctttaaaaatgacagagaatttctgatagtt
aatgatgatgtcacattaaatctcaaaactcatcccgagctatgtatgcttactgcaaca
attgtagacgatgaccaactactgattcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGATGTGCGCCATTTTTGGTA 72 391 1063 Antisense
CACCAACCGGTGCTATTCGAATTTC 693 201 1220 Antisense
GGCAGGACATCCACTGAACACGACA 555 535 1249 Antisense
GAACACGACATCACTGCTCTAGAAC 246 351 1264 Antisense
AAATGATCGACACCTGCTTTACAGA 493 119 1289 Antisense
GAGGGTGAACATCAGGCTCAATCAA 173 403 1312 Antisense
AAAACCAGACCCTATGAACATCGAG 552 131 1335 Antisense
ACATCGAGTCTTACTCACCAACTGT 575 105 1352 Antisense
ATGAGCTTACCGCTAGAGGCTTTAA 265 45 1433 Antisense
AACTCATCCCGAGCTATGTATGCTT 302 141 1509 Antisense
GACGATGACCAACTACTGATTCAAA 357 379 1549 Antisense
Sequence Source Affymetrix Proprietary Database