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[183594_at]

Description C29F9.1 /REP_DB=WormBase Gene ID /WP=CE08449 /TR=Q9TZB2 /GB=AAC68744.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 70      6grp_total > 13      4grp_total > 15      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 369.3
(1.3)
P 		216.3
(-3)
P 		260.5
(-1.7)
P 		428.4
(3)
P 		212
B 398.1
(3)
P 		148.6
(-3)
P 		296.4
(0.6)
P 		341.1
(1.6)
P 		250
C 320.7
(3)
P 		272.2
(0.5)
P 		206.1
(-3)
P 		284.4
(1.1)
P 		115
avr 362.7
(3) 		212.4
(-3) 		254.3
(-1.3) 		351.3
(2.5) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 359.3
(2.4)
P 		383.7
(3)
P 		345.8
(2.1)
P 		288
(0.6)
P 		250.1
(-0.3)
P 		142.7
(-3)
P 		241
B 359.7
(3)
P 		339.4
(2.2)
P 		307.9
(1)
P 		255.2
(-1.1)
P 		244.5
(-1.5)
P 		205.3
(-3)
P 		154
C 376.1
(2.6)
P 		388
(3)
P 		217.9
(-2.2)
P 		265.1
(-0.7)
P 		205.7
(-2.5)
P 		190.1
(-3)
P 		198
avr 365
(2.8) 		370.4
(3) 		290.5
(0.5) 		269.4
(-0.2) 		233.4
(-1.3) 		179.4
(-3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 134.4
(3)
P 		47
(-3)
P 		68.1
(-1.6)
P 		62.7
(-1.9)
P 		87
B 126.9
(3)
P 		36.7
(-3)
P 		68.7
(-0.9)
P 		72.7
(-0.6)
P 		90
C 106.2
(3)
P 		78.3
(0.1)
P 		71.8
(-0.5)
P 		48
(-3)
P 		58
avr 122.5
(3) 		54
(-3) 		69.5
(-1.6) 		61.1
(-2.4) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 66.2
(-1.1)
P 		136.5
(3)
P 		75.3
(-0.6)
P 		73
(-0.7)
P 		75.5
(-0.6)
P 		34.7
(-3)
P 		102
B 125.2
(3)
P 		113
(1.7)
P 		74.8
(-2.3)
P 		67.6
(-3)
P 		99.3
(0.3)
P 		76.6
(-2.1)
P 		58
C 139.4
(3)
P 		118.4
(1.5)
P 		55.5
(-2.8)
P 		53.3
(-3)
P 		66.6
(-2.1)
P 		63.6
(-2.3)
P 		86
avr 110.3
(1.9) 		122.6
(3) 		68.5
(-2) 		64.6
(-2.4) 		80.5
(-0.9) 		58.3
(-3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183594_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8151
Sequence Type Exemplar sequence
Representative Public ID C29F9.1 NCBI
Target Description C29F9.1 /REP_DB=WormBase Gene ID /WP=CE08449 /TR=Q9TZB2 /GB=AAC68744.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064751 NCBI Caenorhabditis elegans C29F9.1 (C29F9.1) mRNA, complete cds. 11/11 None
SNAP00000042033 ENSEMBL cdna:SNAP chromosome:CEL140:III:132424:134369:1 11/11 None
GENEFINDER00000042040 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:132424:134369:1 11/11 None
C29F9.1 ENSEMBL cdna:known chromosome:CEL140:III:132424:134369:1 gene:C29F9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:132423-134369(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F9.1
Entrez Gene 175180 Entrez gene
SwissProt Q9TZB2 EMBL-EBI
WormBase CE08449 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68744 Hypothetical protein C29F9.1 [Caenorhabditis elegans] ref|NP_497152.1| C29F9.1 [Caenorhabditis elegans] 1.0E-150
Sequence
Target Sequence 
>C. ELEGANS:183594_AT
tcttgcaggccagtacctcaatgtgattttaatcttgaaagtgaccgctgggaagaagat
caactggaaaatccgcaaatcaagtcacagtggaaaggttccgaaacaagaccagtggcg
aattttgcaagacgacaacagagagttctcagaactgattggaaacatgtggacgtgcag
attacggtttgggaagaacttaaaaaggtgttggaagcggctgaaatagttgatgtgaca
ctaaatatgatgaaaacattgaatcccgataccaaagctatgtggctactaaaatttcat
acaacttccctaacagaataccttgaggattttgaatcgagagcagagtattttaatgaa
atgttactcgagctcgacggaattcacccggatctgttcacagagtgctcgaattatatt
tctcaactgaaagatgtaacacacagcagagagctccaagcagttcaagtgcacctcccg
aaggctgtgaagaattctgatgcacaaaaagttcggttttacttgcaattggctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGCAGGCCAGTACCTCAATGTG 311 617 250 Antisense
GAAAATCCGCAAATCAAGTCACAGT 397 353 316 Antisense
GACCAGTGGCGAATTTTGCAAGACG 327 383 359 Antisense
TGAATCCCGATACCAAAGCTATGTG 588 575 509 Antisense
ACAACTTCCCTAACAGAATACCTTG 536 111 550 Antisense
TCGAGCTCGACGGAATTCACCCGGA 231 601 617 Antisense
ACCCGGATCTGTTCACAGAGTGCTC 677 89 635 Antisense
AACACACAGCAGAGAGCTCCAAGCA 217 135 687 Antisense
GCTCCAAGCAGTTCAAGTGCACCTC 113 299 702 Antisense
TGCACCTCCCGAAGGCTGTGAAGAA 474 577 719 Antisense
GTTCGGTTTTACTTGCAATTGGCTG 211 441 760 Antisense
Sequence Source Affymetrix Proprietary Database