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[183593_at]

Description F59A1.11 /REP_DB=WormBase Gene ID /WP=CE18795 /TR=Q9XUW3 /GB=CAB04530.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 27      6grp_total > 08      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 135.7
(3)
P 		76
(-1.8)
A 		61.3
(-3)
A 		82.8
(-1.3)
P 		74
B 135.3
(3)
P 		78.1
(-3)
A 		80.8
(-2.7)
A 		99.7
(-0.7)
M 		57
C 119.7
(0.5)
P 		123
(0.7)
P 		74.9
(-3)
P 		152.3
(3)
P 		77
avr 130.2
(3) 		92.4
(-0.9) 		72.3
(-3) 		111.6
(1.1) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 106.3
(3)
A 		82.5
(0.5)
P 		62.9
(-1.5)
A 		80.5
(0.3)
M 		61
(-1.7)
A 		48.6
(-3)
A 		58
B 108
(3)
P 		69.5
(-1.8)
P 		65.1
(-2.3)
A 		61.6
(-2.8)
A 		59.6
(-3)
A 		60.2
(-2.9)
A 		48
C 100.1
(3)
P 		69.3
(-0)
P 		59.7
(-1)
P 		75.4
(0.6)
A 		39.5
(-3)
A 		43.9
(-2.6)
A 		61
avr 104.8
(3) 		73.8
(-0.5) 		62.6
(-1.7) 		72.5
(-0.6) 		53.4
(-2.7) 		50.9
(-3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 49.4
(3)
P 		16.5
(-2.3)
A 		16
(-2.4)
A 		12.1
(-3)
P 		37
B 43.1
(3)
P 		19.3
(-2.9)
A 		18.7
(-3)
A 		21.3
(-2.4)
M 		24
C 39.6
(3)
P 		35.4
(1.2)
P 		26.1
(-2.8)
P 		25.7
(-3)
P 		14
avr 44
(3) 		23.7
(-2) 		20.3
(-2.9) 		19.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 19.6
(-0.3)
A 		29.3
(3)
P 		13.7
(-2.3)
A 		20.4
(-0.1)
M 		18.4
(-0.7)
A 		11.8
(-3)
A 		18
B 37.6
(3)
P 		23.1
(-1)
P 		15.8
(-3)
A 		16.3
(-2.9)
A 		24.2
(-0.7)
A 		22.5
(-1.2)
A 		22
C 37.1
(3)
P 		21.1
(-1)
P 		15.2
(-2.4)
P 		15.2
(-2.4)
A 		12.8
(-3)
A 		14.7
(-2.5)
A 		24
avr 31.4
(3) 		24.5
(0.5) 		14.9
(-3) 		17.3
(-2.1) 		18.5
(-1.7) 		16.3
(-2.5) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14463
Sequence Type Exemplar sequence
Representative Public ID F59A1.11 NCBI
Target Description F59A1.11 /REP_DB=WormBase Gene ID /WP=CE18795 /TR=Q9XUW3 /GB=CAB04530.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075069(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075069 NCBI Caenorhabditis elegans F59A1.11 (F59A1.11) mRNA, complete cds. 9/11 None
GENEFINDER00000002331 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17664389:17670352:-1 11/11 None
F59A1.11 ENSEMBL cdna:known chromosome:CEL140:V:17664447:17666721:-1 gene:F59A1.11 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17664388-17666721(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A1.11
Entrez Gene 186563 Entrez gene
SwissProt Q9XUW3 EMBL-EBI
WormBase CE34039 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04529 Hypothetical protein F59A1.12 [Caenorhabditis elegans] ref|NP_507471.1| F59A1.12 [Caenorhabditis elegans] 0.0
blast CAB04530 Hypothetical protein F59A1.11 [Caenorhabditis elegans] ref|NP_507470.2| F59A1.11 [Caenorhabditis elegans] 1.0E-159
blast CAB04530 Hypothetical protein F59A1.11 [Caenorhabditis elegans] ref|NP_507470.2| F59A1.11 [Caenorhabditis elegans] 1.0E-129
blast CAE61733 Hypothetical protein CBG05684 [Caenorhabditis briggsae] 1.0E-103
blast CAE61733 Hypothetical protein CBG05684 [Caenorhabditis briggsae] 2.0E-81
blast CAB04529 Hypothetical protein F59A1.12 [Caenorhabditis elegans] ref|NP_507471.1| F59A1.12 [Caenorhabditis elegans] 5.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507470.2 4 34-56,147-169,184-201,230-252
F59A1.11 4 34-56,147-169,184-201,230-252
GENEFINDER00000002331 8 36-55,229-251,309-331,338-360,380-402,491-513,575-597,610-632
Sequence
Target Sequence 
>C. ELEGANS:183593_AT
gacgttttccacgagttctcaggattttctaatgcttttcaacttgcaccgactatttat
cattaaaaaaaaaagcctcgtcctactctactccattgccattcccctaatgcttattgg
tccaatcagtgatgcagtaatagcgtacccagttatcctctccggtcaggatatgaatgt
atttttcaaacacggtcaagtaccacttatcaccgttgtcatcgttatttgctatgtgaa
actgaaaaaggaattcgctaccaaccaaagtttctcggaaaaaaccaggaaattgcagga
gaagctgagttgcagtattttagttcaggtcgttatgttgtttgcgatactcgttatcat
ttccatcataccagtggtaatattgatagttttcggagaagatgtgtatcaattacatgc
agcgaagtacactatatatgccttggtcatcaccgaatggtactcatttctctccgcagt
actcatcgcttggtctatagccggatttttcaaagcaccaagccccccggcaaccattca
acactctgatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTTTCCACGAGTTCTCAGGAT 598 377 372 Antisense
TTTCAACTTGCACCGACTATTTATC 98 671 408 Antisense
ATTCCCCTAATGCTTATTGGTCCAA 440 1 472 Antisense
AGTAATAGCGTACCCAGTTATCCTC 653 61 507 Antisense
TACCACTTATCACCGTTGTCATCGT 439 649 572 Antisense
TACTCGTTATCATTTCCATCATACC 273 647 719 Antisense
ATATGCCTTGGTCATCACCGAATGG 68 21 807 Antisense
CACCGAATGGTACTCATTTCTCTCC 322 201 822 Antisense
GTACTCATCGCTTGGTCTATAGCCG 593 457 850 Antisense
GCCGGATTTTTCAAAGCACCAAGCC 81 283 871 Antisense
CGGCAACCATTCAACACTCTGATGT 479 241 899 Antisense
Sequence Source Affymetrix Proprietary Database