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[183592_s_at]

Description F13B12.1 /REP_DB=WormBase Gene ID /WP=CE05599 /TR=Q19375 /GB=CAA94590.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 85      6grp_total > 85      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 478
1 2 3 4 range
A 640
(-3)
P 		715
(-0.9)
P 		701.4
(-1.3)
P 		851.9
(3)
P 		212
B 628.9
(-2.9)
P 		622.2
(-3)
P 		679.6
(-2.3)
P 		1100.2
(3)
P 		478
C 720.3
(-1.2)
P 		630.5
(-3)
P 		695.2
(-1.7)
P 		929.3
(3)
P 		299
avr 663.1
(-2.9) 		655.9
(-3) 		692.1
(-2.3) 		960.5
(3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 664.3
(-0.7)
P 		592.5
(-2.3)
P 		563
(-3)
P 		724.4
(0.7)
P 		799.2
(2.5)
P 		823
(3)
P 		260
B 724.3
(-0.6)
P 		582
(-3)
P 		791.5
(0.5)
P 		925.5
(2.7)
P 		838.6
(1.3)
P 		943.4
(3)
P 		361
C 583
(-3)
P 		608.7
(-2.5)
P 		680.7
(-1.2)
P 		768.7
(0.5)
P 		803.1
(1.2)
P 		900.2
(3)
P 		317
avr 657.2
(-1.7) 		594.4
(-3) 		678.4
(-1.3) 		806.2
(1.3) 		813.6
(1.5) 		888.9
(3) 		295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 233
(3)
P 		155.2
(-1.3)
P 		183.4
(0.3)
P 		124.7
(-3)
P 		108
B 200.6
(0.5)
P 		153.7
(-3)
P 		157.5
(-2.7)
P 		234.5
(3)
P 		81
C 238.5
(2.7)
P 		181.3
(-1.3)
P 		242.3
(3)
P 		156.7
(-3)
P 		86
avr 224
(3) 		163.4
(-3) 		194.4
(0.1) 		172
(-2.1) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 122.5
(-3)
P 		210.7
(1.5)
P 		122.6
(-3)
P 		183.7
(0.1)
P 		241.2
(3)
P 		200.4
(0.9)
P 		119
B 252
(-0.8)
P 		193.7
(-2.9)
P 		192.2
(-3)
P 		245.1
(-1)
P 		340.7
(2.6)
P 		351.8
(3)
P 		160
C 216.1
(-0.5)
P 		185.7
(-1.7)
P 		173.3
(-2.2)
P 		154.6
(-3)
P 		259.9
(1.3)
P 		301.3
(3)
P 		147
avr 196.9
(-1.3) 		196.7
(-1.3) 		162.7
(-3) 		194.5
(-1.4) 		280.6
(2.8) 		284.5
(3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183592_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9043
Sequence Type Exemplar sequence
Representative Public ID F13B12.1 NCBI
Target Description F13B12.1 /REP_DB=WormBase Gene ID /WP=CE05599 /TR=Q19375 /GB=CAA94590.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069523 NCBI Caenorhabditis elegans F13B12.1 (F13B12.1) mRNA, complete cds. 11/11 None
SNAP00000009874 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10422714:10424590:-1 11/11 None
GENEFINDER00000009886 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10422714:10424590:-1 11/11 None
F13B12.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:10422595:10424607:-1 gene:F13B12.1 11/11 None
F13B12.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:10422609:10424609:-1 gene:F13B12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10422719-10424596(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13B12.1
Entrez Gene 177934 Entrez gene
SwissProt Q19375 EMBL-EBI
WormBase CE05599 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245787_AT IWS1 C-terminus family protein at
CANINE:1604657_AT similar to CG9915-PA cfa
CANINE_2:CFA.16206.1.A1_AT similar to CG9915-PA cfa
CANINE_2:CFA.16206.1.A1_S_AT similar to CG9915-PA cfa
CANINE_2:CFA.16206.2.A1_AT similar to CG9915-PA cfa
CANINE_2:CFAAFFX.7655.1.S1_S_AT similar to CG9915-PA cfa
DROSOPHILA_2:1624064_AT dm
DROSGENOME1:145179_AT dm
CHICKEN:GGA.6344.1.S1_AT similar to hypothetical protein 3000008H23 gga
CHICKEN:GGA.6344.3.S1_A_AT similar to hypothetical protein 3000008H23 gga
CHICKEN:GGAAFFX.25212.1.S1_S_AT similar to hypothetical protein 3000008H23 gga
HU35KSUBA:RC_AA598439_AT hypothetical protein FLJ10006 hs
HU35KSUBA:AA287291_AT hypothetical protein FLJ10006 hs
U133_X3P:HS.5570.0.A2_3P_AT hypothetical protein FLJ10006 hs
U133_X3P:HS.5570.0.A1_3P_X_AT hypothetical protein FLJ10006 hs
U133_X3P:HS.5570.0.A1_3P_AT hypothetical protein FLJ10006 hs
HG-U133_PLUS_2:224768_AT hypothetical protein FLJ10006 hs
HG-U133B:224768_AT hypothetical protein FLJ10006 hs
HG-U133_PLUS_2:224775_AT hypothetical protein FLJ10006 hs
HG-U133B:224775_AT hypothetical protein FLJ10006 hs
HG-U95B:45816_AT hypothetical protein FLJ10006 hs
HG-U95E:90272_AT hypothetical protein FLJ10006 hs
U133_X3P:HS2.375776.1.S1_3P_AT Hypothetical protein FLJ10006 hs
HG-U133_PLUS_2:1562110_AT Hypothetical protein FLJ10006 hs
HG-U95D:68132_AT Hypothetical protein FLJ10006 hs
HG-U95D:73775_I_AT Hypothetical protein FLJ10006 hs
HG-U95D:73777_F_AT Hypothetical protein FLJ10006 hs
HG-U95E:87007_AT Hypothetical protein FLJ10006 hs
MG-U74BV2:115338_AT RIKEN cDNA 1700069O15 gene mm
MG-U74BV2:110483_AT RIKEN cDNA 1700069O15 gene mm
MOE430B:1453010_AT RIKEN cDNA 1700069O15 gene mm
MOUSE430_2:1453010_AT RIKEN cDNA 1700069O15 gene mm
RAE230B:1391356_AT Similar to hypothetical protein FLJ10006 (predicted) rn
RAT230_2:1391356_AT Similar to hypothetical protein FLJ10006 (predicted) rn
RAE230A:1389932_AT Similar to hypothetical protein FLJ10006 (predicted) rn
RAT230_2:1389932_AT Similar to hypothetical protein FLJ10006 (predicted) rn
YEAST_2:1777289_AT Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, probable transcriptional elongation factor; metazoan homologs contain an acidic N terminus; mutations in the gene confer an Spt- phenotype Sc
Protein Similarities
Method ID Description E-Value
blast CAA94590 Hypothetical protein F13B12.1 [Caenorhabditis elegans] ref|NP_501924.1| F13B12.1 [Caenorhabditis elegans] 0.0
blast CAE63822 Hypothetical protein CBG08373 [Caenorhabditis briggsae] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR008654 EMBL-EBI IWS1, C-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183592_S_AT
cttccagacaaatgcctaccggcacttgatattcgtataactgtgctcaagttgcttcat
aatccacgattttggaaactcgacagaagtacactgaagcaatcgggtcttggaaaggct
gtcatgatgctttataagcatcctaatgaaacgaaagaaaataaaggaattgcgaataag
ctcattggagaatgggccaggccaatttatcacctagatactgactacagtaccgtttca
aggcaagaacgcgaagaaagggattattctagaatgccggagaaaaggaaaaagaagatc
aacagccgagatgaagaagaacccaatgatgacgatcaaccgaaacgaccacgaatcagg
gatgccgatgaaatggggccaacgaaatctgatgatctgaaacctggagacaagggatac
attccaagagcacgtgttcctaagccatctaccaaagattacgtcatcagaccagagtgg
agagttactggagcgttcaagggggagaagaaatccactggtaacaacagatatgatcag
acattccgcgatttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCAGACAAATGCCTACCGGCAC 270 219 919 Antisense
GCCTACCGGCACTTGATATTCGTAT 708 279 932 Antisense
CAAGTTGCTTCATAATCCACGATTT 367 185 966 Antisense
GCAATCGGGTCTTGGAAAGGCTGTC 63 321 1017 Antisense
TGGGCCAGGCCAATTTATCACCTAG 60 547 1111 Antisense
ACTGACTACAGTACCGTTTCAAGGC 578 93 1138 Antisense
GATGACGATCAACCGAAACGACCAC 507 411 1246 Antisense
AACGACCACGAATCAGGGATGCCGA 695 143 1262 Antisense
TGGGGCCAACGAAATCTGATGATCT 626 553 1292 Antisense
CAAGAGCACGTGTTCCTAAGCCATC 331 185 1343 Antisense
TGATCAGACATTCCGCGATTTCCAA 415 565 1452 Antisense
Sequence Source Affymetrix Proprietary Database