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[183591_at]

Description C29F9.8 /REP_DB=WormBase Gene ID /WP=CE08456 /TR=Q9TZC3 /GB=AAC68749.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 23.6
(-3)
A 		49.5
(3)
A 		28
(-2)
A 		36.5
(-0)
A 		26
B 26.5
(-1.3)
A 		17.5
(-2.4)
A 		60.5
(3)
A 		12.8
(-3)
A 		48
C 28.4
(3)
A 		21.6
(0.3)
A 		13.4
(-3)
A 		17.4
(-1.4)
A 		15
avr 26.2
(-1) 		29.5
(0.7) 		34
(3) 		22.2
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 31.7
(2.5)
A 		3
(-3)
A 		34.2
(3)
A 		15.8
(-0.5)
A 		4.1
(-2.8)
A 		5.3
(-2.6)
A 		31
B 3.7
(-3)
A 		48.9
(3)
A 		39.2
(1.7)
A 		22.3
(-0.5)
A 		22.4
(-0.5)
A 		21.8
(-0.6)
A 		45
C 25.4
(0.1)
A 		36.5
(1.9)
A 		23.1
(-0.3)
A 		6.3
(-3)
A 		43.3
(3)
A 		20.3
(-0.7)
A 		37
avr 20.3
(-1.1) 		29.5
(2.1) 		32.2
(3) 		14.8
(-3) 		23.3
(-0.1) 		15.8
(-2.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.6
(0.7)
A 		10.7
(3)
A 		7.3
(-0.8)
A 		5.3
(-3)
A 		5
B 8.4
(0)
A 		4.3
(-2.2)
A 		14
(3)
A 		2.7
(-3)
A 		11
C 9.4
(3)
A 		6.2
(0)
A 		4.7
(-1.3)
A 		2.9
(-3)
A 		7
avr 8.8
(3) 		7.1
(1) 		8.7
(2.9) 		3.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.8
(1.4)
A 		1
(-3)
A 		7.5
(3)
A 		4
(-0.2)
A 		1.2
(-2.8)
A 		1.3
(-2.7)
A 		7
B 1.3
(-3)
A 		16.3
(3)
A 		9.5
(0.3)
A 		5.9
(-1.2)
A 		9.1
(0.1)
A 		8.1
(-0.3)
A 		15
C 9.4
(0.8)
A 		11.1
(1.6)
A 		5.9
(-0.8)
A 		1.3
(-3)
A 		14
(3)
A 		6.8
(-0.4)
A 		13
avr 5.5
(-1.1) 		9.5
(3) 		7.6
(1) 		3.7
(-3) 		8.1
(1.6) 		5.4
(-1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8146
Sequence Type Exemplar sequence
Representative Public ID C29F9.8 NCBI
Target Description C29F9.8 /REP_DB=WormBase Gene ID /WP=CE08456 /TR=Q9TZC3 /GB=AAC68749.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064739 NCBI Caenorhabditis elegans C29F9.8 (C29F9.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000042038 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:95127:110748:-1 11/11 None
C29F9.8 ENSEMBL cdna:known chromosome:CEL140:III:95393:97725:-1 gene:C29F9.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042027 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:95392-97725(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F9.8
Entrez Gene 183024 Entrez gene
SwissProt Q9TZC3 EMBL-EBI
WormBase CE08456 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68752 Hypothetical protein C29F9.11 [Caenorhabditis elegans] ref|NP_497143.1| C29F9.11 [Caenorhabditis elegans] 1.0E-154
blast AAC68749 Hypothetical protein C29F9.8 [Caenorhabditis elegans] ref|NP_497140.1| C29F9.8 [Caenorhabditis elegans] 1.0E-145
blast AAC68749 Hypothetical protein C29F9.8 [Caenorhabditis elegans] ref|NP_497140.1| C29F9.8 [Caenorhabditis elegans] 1.0E-115
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 1.0E-108
blast AAC68750 Hypothetical protein C29F9.9 [Caenorhabditis elegans] ref|NP_497141.1| C29F9.9 [Caenorhabditis elegans] 8.0E-51
blast NP_001023817 Serpentine Receptor, class W family member (srw-68) [Caenorhabditis elegans] gb|AAK18938.3| Serpentine receptor, class w protein 68, isoform a [Caenorhabditis elegans] 1.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.8E-57
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.4E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497140.1 1 132-154
C29F9.8 1 132-154
GENEFINDER00000042038 2 729-751,896-913
Sequence
Target Sequence 
>C. ELEGANS:183591_AT
tggagttgttaagcacttaccttttttgctacagcagcagctgaaatacgtcagagaagt
ccgtcggaagagctcggcgagcatgggaaaaaacgcggaaaaaaatatagtctacaattt
cctggacattttcacgattttcgtgccaattaacgcgattctccactgccttctctgcct
tggagtgaacactttgtaccggaaaactgtggggaggatgttttgtggtgaagaggtggc
caggaagacctcgaagtcagtgtccccccattcatcaactttggtagctttggagctcgt
atttctggatatttttgaatataacacattccaagttacagtaattcttctgaaactcgc
tgcggagcttcagagcaaaaattacgatttcctcaaaatttttaagagaaaaccagaagc
tcgttttcagccaaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGTTGTTAAGCACTTACCTTTT 115 545 279 Antisense
TTTCCTGGACATTTTCACGATTTTC 509 669 396 Antisense
GTGCCAATTAACGCGATTCTCCACT 229 477 421 Antisense
TGCCTTCTCTGCCTTGGAGTGAACA 566 583 445 Antisense
GAACACTTTGTACCGGAAAACTGTG 571 319 465 Antisense
CTGTGGGGAGGATGTTTTGTGGTGA 325 239 485 Antisense
TCCCCCCATTCATCAACTTTGGTAG 652 593 541 Antisense
AGCTTTGGAGCTCGTATTTCTGGAT 378 79 564 Antisense
CAGTAATTCTTCTGAAACTCGCTGC 312 207 617 Antisense
GAAACTCGCTGCGGAGCTTCAGAGC 372 357 630 Antisense
CAGAAGCTCGTTTTCAGCCAAATTT 664 203 692 Antisense
Sequence Source Affymetrix Proprietary Database