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[183589_at]

Description F58E2.5 /REP_DB=WormBase Gene ID /WP=CE17133 /TR=Q9TZ02 /GB=AAC68963.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 34.3
(0.9)
A 		14.5
(-2)
A 		7.7
(-3)
A 		48.5
(3)
A 		41
B 10.7
(-2.8)
A 		10
(-3)
A 		18.4
(-0.5)
A 		29.9
(3)
A 		20
C 21.3
(-3)
A 		61.8
(2.2)
A 		28.6
(-2.1)
A 		68.1
(3)
A 		47
avr 22.1
(-2.2) 		28.8
(-0.9) 		18.2
(-3) 		48.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 27.9
(-1.7)
A 		26.6
(-1.8)
A 		45.9
(0.9)
A 		60.8
(3)
A 		18.4
(-3)
A 		34
(-0.8)
A 		42
B 46.3
(3)
A 		10.7
(-2.1)
A 		4.1
(-3)
A 		10.2
(-2.1)
A 		34.4
(1.3)
A 		5.4
(-2.8)
A 		42
C 52.4
(1)
A 		19.5
(-1.7)
A 		21.6
(-1.6)
A 		77.3
(3)
A 		35.9
(-0.4)
A 		4.1
(-3)
A 		73
avr 42.2
(1.8) 		18.9
(-2.2) 		23.9
(-1.4) 		49.4
(3) 		29.6
(-0.4) 		14.5
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.5
(3)
A 		3.2
(-2.3)
A 		2
(-3)
A 		7.1
(-0.1)
A 		11
B 3.4
(-1.6)
A 		2.5
(-3)
A 		4.3
(-0.2)
A 		6.4
(3)
A 		4
C 7
(-3)
A 		17.8
(3)
A 		10
(-1.3)
A 		11.5
(-0.5)
A 		11
avr 7.6
(1.6) 		7.8
(2) 		5.4
(-3) 		8.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.1
(-3)
A 		9.4
(-0.5)
A 		10
(-0.1)
A 		15.4
(3)
A 		5.5
(-2.8)
A 		8.3
(-1.1)
A 		10
B 16.1
(3)
A 		3.5
(-2)
A 		1
(-3)
A 		2.7
(-2.3)
A 		14
(2.2)
A 		2
(-2.6)
A 		15
C 19.4
(3)
A 		5.9
(-1.5)
A 		5.5
(-1.6)
A 		15.5
(1.7)
A 		11.6
(0.4)
A 		1.4
(-3)
A 		18
avr 13.5
(3) 		6.3
(-1.5) 		5.5
(-2) 		11.2
(1.6) 		10.4
(1.1) 		3.9
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10653
Sequence Type Exemplar sequence
Representative Public ID F58E2.5 NCBI
Target Description F58E2.5 /REP_DB=WormBase Gene ID /WP=CE17133 /TR=Q9TZ02 /GB=AAC68963.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067948(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067948 NCBI Caenorhabditis elegans F58E2.5 (F58E2.5) mRNA, complete cds. 11/11 None
SNAP00000029892 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3444911:3446525:1 11/11 None
F58E2.5 ENSEMBL cdna:known chromosome:CEL140:IV:3444911:3446525:1 gene:F58E2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3444916-3446531(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E2.5
Entrez Gene 186521 Entrez gene
SwissProt Q9TZ02 EMBL-EBI
WormBase CE17133 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68963 Hypothetical protein F58E2.5 [Caenorhabditis elegans] ref|NP_500349.1| F58E2.5 [Caenorhabditis elegans] 1.0E-136
blast AAC68963 Hypothetical protein F58E2.5 [Caenorhabditis elegans] ref|NP_500349.1| F58E2.5 [Caenorhabditis elegans] 1.0E-115
blast CAB05011 Hypothetical protein ZK384.2 [Caenorhabditis elegans] ref|NP_507655.1| ZK384.2 [Caenorhabditis elegans] 7.0E-11
blast CAA21513 Hypothetical protein Y43F8B.5 [Caenorhabditis elegans] ref|NP_507793.1| Y43F8B.5 [Caenorhabditis elegans] 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 3.5E-25
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.4E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500349.1 1 16-38
F58E2.5 1 16-38
SNAP00000029892 1 16-38
Sequence
Target Sequence 
>C. ELEGANS:183589_AT
tgaatctagcttctgctattgcccacaaggatattctcaacgcctataacaacttgagat
ccgaaattgcaaatgggacattcacaatgaagttgcagtttcctgatattacaattccat
tggcacctgcagcaggaatgctgaaactgaaatggaactgccgtctagcggctcttgctc
aagcctatgtggattcatgtcccagttatcaggacttacgcgtacataaaccgaaatttc
ctgttacgtatagtttcctggacgctaatttacaagaacacataaaagatccagtactgt
atcgattcaagatattggagatggattttcgtagaggctatattaatgatgattggttca
aaaaactaatctcctcaaaatctattggctgcgcattcaacaattgttcggagaatgtgt
tgttcgtctgttactacaaagagcaaatatatgaggactttaaatttcctgtgaatggtg
gtgcggaacctggaagatttatcaaagaacttgatgattatgttccacgatacaaggaag
gaaaagcgtgttcagcttgtcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATCTAGCTTCTGCTATTGCCCA 559 575 107 Antisense
GGATATTCTCAACGCCTATAACAAC 663 509 135 Antisense
TACAATTCCATTGGCACCTGCAGCA 42 643 216 Antisense
AATGGAACTGCCGTCTAGCGGCTCT 151 163 257 Antisense
CGGCTCTTGCTCAAGCCTATGTGGA 135 243 275 Antisense
GTGGATTCATGTCCCAGTTATCAGG 138 489 295 Antisense
AGTTATCAGGACTTACGCGTACATA 526 61 310 Antisense
TTTCCTGTTACGTATAGTTTCCTGG 31 671 343 Antisense
AAATCTATTGGCTGCGCATTCAACA 512 117 484 Antisense
GAATGTGTTGTTCGTCTGTTACTAC 133 333 519 Antisense
GAAAAGCGTGTTCAGCTTGTCCTCC 244 355 647 Antisense
Sequence Source Affymetrix Proprietary Database