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[183588_at]

Description C29F9.6 /REP_DB=WormBase Gene ID /WP=CE08454 /TR=Q9TZB9 /GB=AAC68748.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 39.3
(-2.8)
A 		113.9
(-1.2)
P 		31
(-3)
A 		304
(3)
P 		273
B 53.4
(-3)
A 		151.1
(1.5)
A 		92.3
(-1.2)
P 		184.5
(3)
P 		131
C 26
(-3)
A 		158.8
(2.3)
A 		45.4
(-2.2)
A 		175.6
(3)
P 		150
avr 39.6
(-3) 		141.3
(0.4) 		56.2
(-2.5) 		221.4
(3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 107
(0.9)
A 		10.6
(-3)
A 		89.6
(0.2)
P 		122.2
(1.5)
P 		64.9
(-0.8)
P 		158.7
(3)
A 		148
B 73.9
(-0.9)
A 		31.8
(-3)
A 		149.7
(3)
P 		132.3
(2.1)
P 		46.4
(-2.3)
P 		141
(2.6)
P 		118
C 61.4
(-1.2)
A 		22
(-3)
A 		92.1
(0.1)
A 		156
(3)
P 		117.7
(1.3)
P 		103.8
(0.7)
P 		134
avr 80.8
(0.1) 		21.5
(-3) 		110.5
(1.6) 		136.8
(3) 		76.3
(-0.1) 		134.5
(2.9) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 14.3
(-2)
A 		24.7
(-0.3)
P 		8.1
(-3)
A 		44.5
(3)
P 		36
B 17
(-3)
A 		37.3
(2.5)
A 		21.4
(-1.8)
P 		39.3
(3)
P 		22
C 8.6
(-3)
A 		45.7
(3)
A 		15.8
(-1.8)
A 		29.6
(0.4)
P 		37
avr 13.3
(-3) 		35.9
(2.5) 		15.1
(-2.6) 		37.8
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 19.7
(-0.3)
A 		3.8
(-3)
A 		19.5
(-0.3)
P 		31
(1.7)
P 		19.6
(-0.3)
P 		38.6
(3)
A 		35
B 25.7
(-0.8)
A 		10.6
(-3)
A 		36.4
(0.7)
P 		35
(0.5)
P 		18.9
(-1.8)
P 		52.6
(3)
P 		42
C 22.8
(0.1)
A 		6.7
(-3)
A 		23.4
(0.2)
A 		31.4
(1.7)
P 		38.1
(3)
P 		34.7
(2.4)
P 		31
avr 22.7
(-0.3) 		7
(-3) 		26.4
(0.3) 		32.5
(1.4) 		25.5
(0.2) 		42
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8231
Sequence Type Exemplar sequence
Representative Public ID C29F9.6 NCBI
Target Description C29F9.6 /REP_DB=WormBase Gene ID /WP=CE08454 /TR=Q9TZB9 /GB=AAC68748.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064743 NCBI Caenorhabditis elegans C29F9.6 (C29F9.6) mRNA, complete cds. 11/11 None
SNAP00000042029 ENSEMBL cdna:SNAP chromosome:CEL140:III:114866:116493:1 10/11 None
GENEFINDER00000042036 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:115207:116493:1 10/11 None
C29F9.6 ENSEMBL cdna:known chromosome:CEL140:III:115698:116493:1 gene:C29F9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:115697-116493(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F9.6
Entrez Gene 183023 Entrez gene
SwissProt Q9TZB9 EMBL-EBI
WormBase CE08454 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3712 transcription cofactor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68748 Hypothetical protein C29F9.6 [Caenorhabditis elegans] ref|NP_497144.1| C29F9.6 [Caenorhabditis elegans] 1.0E-125
blast AAC68748 Hypothetical protein C29F9.6 [Caenorhabditis elegans] ref|NP_497144.1| C29F9.6 [Caenorhabditis elegans] 1.0E-107
blast AAC68747 Hypothetical protein C29F9.5 [Caenorhabditis elegans] ref|NP_497145.1| C29F9.5 [Caenorhabditis elegans] 1.0E-31
blast AAC68747 Hypothetical protein C29F9.5 [Caenorhabditis elegans] ref|NP_497145.1| C29F9.5 [Caenorhabditis elegans] 2.0E-31
blast AAC68747 Hypothetical protein C29F9.5 [Caenorhabditis elegans] ref|NP_497145.1| C29F9.5 [Caenorhabditis elegans] 4.0E-28
blast CAA82665 Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] ref|NP_499201.1| K03H1.10 [Caenorhabditis elegans] 3.0E-17
blast CAA82665 Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] ref|NP_499201.1| K03H1.10 [Caenorhabditis elegans] 4.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000197 EMBL-EBI TAZ finger 9.5E-13
Pfam IPR000197 EMBL-EBI TAZ finger 6.1E-18
Pfam IPR000197 EMBL-EBI TAZ finger 6.1E-18
Sequence
Target Sequence 
>C. ELEGANS:183588_AT
gcagatcgctgagcaatgtcctgttccgcagtgctccacgatgaaggaggtgatcgggca
tatgatgacgtgttggaatgggtttcagtgtccctccgaacactgcacttcgtctcgtat
ggtcatccaccattggacacgctgtaccaatgcggaatgcccgatttgtggagcacacag
gactgcacagaatatgaacgcgttgagcacaattcctatcgtcaaggatcccgagccaag
acctccaggaacctcacaaccgtggcacagtgaagttccgaaaaccgatagagaggcagt
tattgagagaatctccaaacacatcatgctccatccgcaaagattcgagccaatttggaa
gataaaggaggacgcgagggctgctgagcttcagatttttgaagcagcggggagtaggga
tgagtactaccgcatggttgaggagcgagctccccgcgagcaggacaaagctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGATCGCTGAGCAATGTCCTGTT 245 313 108 Antisense
TTCCGCAGTGCTCCACGATGAAGGA 190 699 131 Antisense
TGGAATGGGTTTCAGTGTCCCTCCG 296 543 181 Antisense
TCATCCACCATTGGACACGCTGTAC 198 623 230 Antisense
GCGGAATGCCCGATTTGTGGAGCAC 443 293 259 Antisense
GAACGCGTTGAGCACAATTCCTATC 407 347 303 Antisense
CTATCGTCAAGGATCCCGAGCCAAG 62 225 323 Antisense
AACCTCACAACCGTGGCACAGTGAA 575 147 357 Antisense
AGAATCTCCAAACACATCATGCTCC 497 75 415 Antisense
AGGGATGAGTACTACCGCATGGTTG 275 59 523 Antisense
CTCCCCGCGAGCAGGACAAAGCTCC 46 235 557 Antisense
Sequence Source Affymetrix Proprietary Database