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[183587_at]

Description F40F11.3 /REP_DB=WormBase Gene ID /WP=CE05862 /TR=Q20208 /GB=CAA97794.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 05      6grp_total > 97      4grp_total > 02      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 83.4
(-3)
P 		111.1
(-1.9)
P 		106.8
(-2)
A 		228.9
(3)
P 		146
B 115.4
(-0.9)
P 		64.2
(-3)
P 		97.6
(-1.7)
P 		212.9
(3)
P 		149
C 115
(-2.2)
P 		95.8
(-2.6)
P 		80.4
(-3)
P 		342.8
(3)
P 		262
avr 104.6
(-2.5) 		90.4
(-3) 		94.9
(-2.8) 		261.5
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 65.3
(-3)
A 		68.7
(-2.9)
P 		162.9
(0.1)
P 		150.1
(-0.3)
P 		252.6
(3)
P 		246.6
(2.8)
P 		187
B 104.8
(-3)
P 		109.9
(-2.9)
P 		132.6
(-2.6)
P 		115.7
(-2.8)
P 		363.5
(0.8)
P 		510.1
(3)
P 		405
C 117.2
(-2.4)
P 		98.6
(-2.6)
P 		62.7
(-3)
M 		131.9
(-2.2)
P 		315.3
(-0.2)
P 		608.6
(3)
P 		546
avr 95.8
(-2.9) 		92.4
(-3) 		119.4
(-2.6) 		132.6
(-2.3) 		310.5
(0.6) 		455.1
(3) 		363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 30.4
(1)
P 		24.1
(-3)
P 		27.9
(-0.6)
A 		33.5
(3)
P 		9
B 36.8
(1.3)
P 		15.8
(-3)
P 		22.6
(-1.6)
P 		45.4
(3)
P 		30
C 38.1
(-0.9)
P 		27.5
(-3)
P 		28
(-2.9)
P 		57.8
(3)
P 		30
avr 35.1
(0.3) 		22.5
(-3) 		26.2
(-2) 		45.6
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 12
(-3)
A 		24.4
(-1.8)
P 		35.5
(-0.8)
P 		38.1
(-0.6)
P 		76.2
(3)
P 		60
(1.5)
P 		64
B 36.5
(-2.8)
P 		36.6
(-2.8)
P 		32.2
(-2.9)
P 		30.7
(-3)
P 		147.7
(1.4)
P 		190.2
(3)
P 		160
C 43.4
(-2.1)
P 		30.1
(-2.5)
P 		16
(-3)
M 		26.5
(-2.7)
P 		102
(-0.3)
P 		203.7
(3)
P 		188
avr 30.6
(-2.9) 		30.4
(-2.9) 		27.9
(-3) 		31.8
(-2.8) 		108.6
(0.9) 		151.3
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9666
Sequence Type Exemplar sequence
Representative Public ID F40F11.3 NCBI
Target Description F40F11.3 /REP_DB=WormBase Gene ID /WP=CE05862 /TR=Q20208 /GB=CAA97794.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069783 NCBI Caenorhabditis elegans F40F11.3 (F40F11.3) mRNA, complete cds. 11/11 None
SNAP00000006485 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11592385:11592817:-1 11/11 None
GENEFINDER00000006492 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11592321:11592817:-1 11/11 None
F40F11.3 ENSEMBL cdna:known chromosome:CEL140:IV:11592321:11592817:-1 gene:F40F11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11592326-11592823(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F11.3
Entrez Gene 185547 Entrez gene
SwissProt Q20208 EMBL-EBI
WormBase CE05862 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97794 Hypothetical protein F40F11.3 [Caenorhabditis elegans] ref|NP_502184.1| F40F11.3 [Caenorhabditis elegans] 3.0E-62
blast CAA97794 Hypothetical protein F40F11.3 [Caenorhabditis elegans] ref|NP_502184.1| F40F11.3 [Caenorhabditis elegans] 2.0E-58
blast CAE62094 Hypothetical protein CBG06121 [Caenorhabditis briggsae] 8.0E-36
blast CAE62094 Hypothetical protein CBG06121 [Caenorhabditis briggsae] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:183587_AT
tgtcttgcccatacatcgatgaggacaaaatcgtggggaatgttgagatggagttgaaaa
aaggaggaactttcgataaactgcgaaaacaagcaattgagcacgtcaaggattcaaaat
tggtgcaccggattgagaatgaaatgttggttaaagtagatgaaatcattgcatcgtcag
cgaatcttacgcaagaagaaattcaacggaaaatgaaagatttcatgaatgaaaatgcaa
aaatgcgcaacgacattaatcgacaaatacgcgtggagttcgaaaaggagtgggtgcacg
atgaactggacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTTGCCCATACATCGATGAGGA 626 557 14 Antisense
AAGGAGGAACTTTCGATAAACTGCG 570 157 74 Antisense
ACAAGCAATTGAGCACGTCAAGGAT 400 111 102 Antisense
AAGGATTCAAAATTGGTGCACCGGA 117 159 121 Antisense
ATTGGTGCACCGGATTGAGAATGAA 552 3 132 Antisense
ATGAAATCATTGCATCGTCAGCGAA 210 45 173 Antisense
GCATCGTCAGCGAATCTTACGCAAG 707 303 184 Antisense
AATGCGCAACGACATTAATCGACAA 371 165 255 Antisense
TAATCGACAAATACGCGTGGAGTTC 593 635 270 Antisense
GGAGTTCGAAAAGGAGTGGGTGCAC 483 517 288 Antisense
GTGGGTGCACGATGAACTGGACAAA 606 487 303 Antisense
Sequence Source Affymetrix Proprietary Database