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[183586_at] 7TM chemoreceptor, sre family

Description T07H8.7 /REP_DB=WormBase Gene ID /WP=CE18228 /TR=O61898 /GB=AAC17675.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 05      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 43.6
(-0.5)
P 		10.4
(-3)
A 		31.6
(-1.4)
A 		90.3
(3)
P 		80
B 31.2
(-2.1)
P 		26.5
(-3)
A 		57.2
(3)
A 		39.6
(-0.4)
A 		31
C 46.4
(-0.1)
A 		30.5
(-1.4)
A 		11.4
(-3)
A 		84.8
(3)
P 		73
avr 40.4
(-0.8) 		22.5
(-3) 		33.4
(-1.7) 		71.6
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 8
(-3)
A 		19.9
(-1.1)
A 		44.8
(3)
A 		28.9
(0.4)
A 		39.5
(2.1)
A 		13
(-2.2)
A 		37
B 28.5
(-1.2)
A 		73.1
(3)
M 		21.6
(-1.9)
A 		9.6
(-3)
A 		23.5
(-1.7)
A 		20.7
(-2)
A 		64
C 27.6
(-0)
A 		46.4
(3)
A 		45.7
(2.9)
A 		28.8
(0.2)
A 		9.2
(-3)
A 		27.7
(-0)
A 		37
avr 21.4
(-2.8) 		46.5
(3) 		37.4
(0.9) 		22.4
(-2.6) 		24.1
(-2.2) 		20.5
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.9
(3)
P 		2.3
(-3)
A 		8.3
(-0.4)
A 		13.2
(1.8)
P 		14
B 9.9
(0)
P 		6.6
(-3)
A 		13.2
(3)
A 		8.4
(-1.4)
A 		7
C 15.4
(3)
A 		8.8
(-0.5)
A 		4
(-3)
A 		14.3
(2.4)
P 		11
avr 13.7
(3) 		5.9
(-3) 		8.5
(-1) 		12
(1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.5
(-3)
A 		7.1
(0.2)
A 		9.8
(1.8)
A 		7.3
(0.3)
A 		11.9
(3)
A 		3.2
(-2)
A 		10
B 9.9
(-1)
A 		24.3
(3)
M 		5.2
(-2.3)
A 		2.6
(-3)
A 		9.6
(-1.1)
A 		7.7
(-1.6)
A 		22
C 10.2
(0.9)
A 		14.2
(3)
A 		11.6
(1.6)
A 		5.8
(-1.5)
A 		3
(-3)
A 		9.3
(0.4)
A 		11
avr 7.2
(-1.8) 		15.2
(3) 		8.9
(-0.8) 		5.2
(-3) 		8.2
(-1.2) 		6.7
(-2.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11522
Sequence Type Exemplar sequence
Representative Public ID T07H8.7 NCBI
Target Description T07H8.7 /REP_DB=WormBase Gene ID /WP=CE18228 /TR=O61898 /GB=AAC17675.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072363 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-12) (sre-12) mRNA, complete cds. 11/11 None
GENEFINDER00000037164 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6980347:6981709:-1 11/11 None
T07H8.7 ENSEMBL cdna:known chromosome:CEL140:V:6980347:6981709:-1 gene:T07H8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6980347-6981710(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-12
Ensembl T07H8.7
Entrez Gene 188261 Entrez gene
SwissProt O61898 EMBL-EBI
WormBase CE18228 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504764 Serpentine Receptor, class E (epsilon) family member (sre-12) [Caenorhabditis elegans] gb|AAC17675.1| Serpentine receptor, class e (epsilon) protein 12 [Caenorhabditis elegans] sp|O61898|SRE12_CAEEL Serpentine receptor class epsilon-12 (Protein sre-12) 0.0
blast CAE71981 Hypothetical protein CBG19056 [Caenorhabditis briggsae] 1.0E-117
blast AAN84867 Serpentine receptor, class e (epsilon) protein 11 [Caenorhabditis elegans] ref|NP_872215.2| Serpentine Receptor, class E (epsilon) family member (sre-11) [Caenorhabditis elegans] 4.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.6E-123
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504764.1 7 26-48,55-77,97-119,139-161,165-187,228-250,265-287
T07H8.7 7 26-48,55-77,97-119,139-161,165-187,228-250,265-287
GENEFINDER00000037164 7 26-48,55-77,97-119,139-161,165-187,228-250,265-287
Sequence
Target Sequence 
>C. ELEGANS:183586_AT
atagtcgagcttacatttcatatgctctggtttttctcttgaattttattggtattatcg
gcgcaatccttttgcagaataaaaacaatacaatatttgtggttgcatttttgatgatct
taaatttgtttgctttattaactaatcagtttcttcgaacgtggaacttgaaaaagtacg
aagagtgtcacagcaacgtttcaattcgattccaacgaggtggaaagtactcattggcaa
aacgatttcaaatttctgaaaacataaaatcgttacatatgttaaactttatcattttgt
acatggggtttatgaatgtttgtcttgtcattagcgtcctcttttcaagcttcgacatct
cgcccgaacgccaagcaatttgttctctggctcttgacgcgagtatatttttctacagtt
tcgctattccacagatcatgacgtgtttctgtcacaaatggaaggttcagacaaacacgt
tcaggatccggataggttgcttgagaactggaaaagtcaatctggaaccattgagagata
catttggaggagacatgcgcggaagcgtttctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGTCGAGCTTACATTTCATATGC 69 23 419 Antisense
CATATGCTCTGGTTTTTCTCTTGAA 173 215 437 Antisense
GGTATTATCGGCGCAATCCTTTTGC 282 503 469 Antisense
GAGTGTCACAGCAACGTTTCAATTC 591 401 601 Antisense
TGTCATTAGCGTCCTCTTTTCAAGC 135 559 744 Antisense
AAGCAATTTGTTCTCTGGCTCTTGA 427 151 791 Antisense
TTCTCTGGCTCTTGACGCGAGTATA 60 691 801 Antisense
ATTTTTCTACAGTTTCGCTATTCCA 168 15 825 Antisense
GTTTCGCTATTCCACAGATCATGAC 187 451 836 Antisense
GACAAACACGTTCAGGATCCGGATA 583 361 888 Antisense
GAGACATGCGCGGAAGCGTTTCTAT 508 393 968 Antisense
Sequence Source Affymetrix Proprietary Database