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[183585_at]

Description K03H6.5 /REP_DB=WormBase Gene ID /WP=CE18014 /TR=O45174 /GB=AAC04416.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 101.6
(3)
M 		71.6
(0.8)
A 		92.3
(2.3)
A 		19
(-3)
A 		83
B 164.7
(3)
P 		85.7
(-1.7)
A 		68.9
(-2.7)
A 		64.7
(-3)
A 		100
C 150.4
(3)
P 		120.4
(0.5)
A 		78.1
(-3)
A 		99
(-1.3)
A 		72
avr 138.9
(3) 		92.6
(-0.6) 		79.8
(-1.5) 		60.9
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 86.7
(3)
A 		73.2
(-0.4)
A 		73.7
(-0.3)
A 		75.7
(0.2)
A 		77.1
(0.6)
A 		62.9
(-3)
A 		24
B 98.3
(1.7)
P 		113
(3)
P 		62.1
(-1.6)
A 		56.2
(-2.1)
A 		90.7
(1)
P 		46.5
(-3)
A 		67
C 93.2
(2.1)
A 		98.5
(2.5)
P 		105.2
(3)
A 		20.9
(-3)
A 		79.1
(1.1)
P 		56.8
(-0.4)
A 		84
avr 92.7
(2.7) 		94.9
(3) 		80.3
(1) 		50.9
(-3) 		82.3
(1.3) 		55.4
(-2.4) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 37
(3)
M 		15.5
(-0.8)
A 		24.1
(0.7)
A 		2.8
(-3)
A 		34
B 52.5
(3)
P 		21.2
(-1.9)
A 		16
(-2.7)
A 		13.8
(-3)
A 		39
C 49.8
(3)
P 		34.6
(0.2)
A 		27.2
(-1.1)
A 		16.7
(-3)
A 		33
avr 46.4
(3) 		23.8
(-0.8) 		22.4
(-1.1) 		11.1
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 16
(-2.6)
A 		26
(3)
A 		16
(-2.6)
A 		19.2
(-0.8)
A 		23.3
(1.5)
A 		15.3
(-3)
A 		11
B 34.2
(2.1)
P 		37.6
(3)
P 		15.1
(-2.9)
A 		14.9
(-3)
A 		36.8
(2.8)
P 		17.3
(-2.4)
A 		23
C 34.6
(3)
A 		30.1
(2.1)
P 		26.8
(1.5)
A 		4.2
(-3)
A 		25.6
(1.2)
P 		19
(-0.1)
A 		30
avr 28.3
(2.1) 		31.2
(3) 		19.3
(-0.9) 		12.8
(-3) 		28.6
(2.2) 		17.2
(-1.6) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10610
Sequence Type Exemplar sequence
Representative Public ID K03H6.5 NCBI
Target Description K03H6.5 /REP_DB=WormBase Gene ID /WP=CE18014 /TR=O45174 /GB=AAC04416.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067692(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067692 NCBI Caenorhabditis elegans K03H6.5 (K03H6.5) mRNA, complete cds. 10/11 None
GENEFINDER00000035096 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1527219:1532473:-1 10/11 None
K03H6.5 ENSEMBL cdna:known chromosome:CEL140:IV:1527549:1530748:-1 gene:K03H6.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1527554-1530754(-) 96.44 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H6.5
Entrez Gene 186965 Entrez gene
SwissProt O45174 EMBL-EBI
WormBase CE36599 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE67957 Hypothetical protein CBG13561 [Caenorhabditis briggsae] 1.0E-180
blast AAC04416 Hypothetical protein K03H6.5 [Caenorhabditis elegans] ref|NP_500093.2| K03H6.5 [Caenorhabditis elegans] 1.0E-171
blast AAC04416 Hypothetical protein K03H6.5 [Caenorhabditis elegans] ref|NP_500093.2| K03H6.5 [Caenorhabditis elegans] 1.0E-168
blast CAE67957 Hypothetical protein CBG13561 [Caenorhabditis briggsae] 1.0E-149
blast CAE67956 Hypothetical protein CBG13560 [Caenorhabditis briggsae] 7.0E-58
blast CAE67956 Hypothetical protein CBG13560 [Caenorhabditis briggsae] 8.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500093.2 6 9-30,50-72,93-110,159-181,213-235,245-267
K03H6.5 6 9-30,50-72,93-110,159-181,213-235,245-267
GENEFINDER00000035096 7 29-51,58-80,100-122,143-160,209-231,263-285,295-317
Sequence
Target Sequence 
>C. ELEGANS:183585_AT
gtgccatggcactcagatccttggcaagtgctatccgaacactgaggacatgcacggcag
gaagatcaacccgacgagcctatccgtgaagcagtaccttcatacttctgtgtacgcaaa
tgcgctgctcgccgtgcttctgccgattttcgctgtggcagtgctcaatatttcactgat
tcgtttggtaaagcggaggcattctgaggaacttctcgtccgaaacgctgccggaccatc
gagtatggccgagcaggagaagaagatgacgcacaccgtgctggcgatcgtctcatgctt
cacactgacacagggaccgtcggccatagttttcatttcacaaaagatgttcccaccaaa
tcacccattttgggcctattttcaaaatcgtccgagccaaaattcccggagacaacaatt
ttcagcctctaacaagcctatttccagatattccatctatatatccgtggtggcgaatca
actagtgctcaccggcaaaatgctcaacgtagtcctcttctgcctcacctcagagacctt
ccgccgccgcctctggctaacctgcaggttttggtgccagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCATGGCACTCAGATCCTTGGC 30 479 378 Antisense
GATCCTTGGCAAGTGCTATCCGAAC 703 415 393 Antisense
TGTGTACGCAAATGCGCTGCTCGCC 582 555 486 Antisense
GATTTTCGCTGTGGCAGTGCTCAAT 417 429 522 Antisense
TGAGGAACTTCTCGTCCGAAACGCT 435 567 582 Antisense
GCCGGACCATCGAGTATGGCCGAGC 333 283 607 Antisense
GCTTCACACTGACACAGGGACCGTC 251 303 674 Antisense
CGTCGGCCATAGTTTTCATTTCACA 181 247 695 Antisense
TTTCAGCCTCTAACAAGCCTATTTC 676 671 797 Antisense
AAAATGCTCAACGTAGTCCTCTTCT 124 133 874 Antisense
TAACCTGCAGGTTTTGGTGCCAGCT 166 637 935 Antisense
Sequence Source Affymetrix Proprietary Database