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[183584_at]

Description K09E3.7 /REP_DB=WormBase Gene ID /WP=CE04745 /TR=Q21401 /GB=AAA82378.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 61      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 35.6
(2.4)
A 		3.4
(-3)
A 		38.9
(3)
A 		32.7
(2)
A 		36
B 39.1
(0.2)
A 		36.6
(-0.1)
A 		61.7
(3)
A 		13.8
(-3)
A 		48
C 34.1
(0.7)
A 		44.1
(3)
A 		23.9
(-1.7)
A 		18.2
(-3)
A 		26
avr 36.3
(1.4) 		28
(-1.1) 		41.5
(3) 		21.6
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 107.5
(3)
A 		38.8
(-3)
A 		55.6
(-1.5)
A 		52.8
(-1.8)
A 		68.9
(-0.4)
A 		83.3
(0.9)
A 		69
B 13.3
(-3)
A 		30.5
(-0.3)
A 		16
(-2.6)
A 		51.7
(3)
A 		20.3
(-1.9)
A 		37.6
(0.8)
A 		38
C 59.6
(0.5)
A 		62.5
(0.8)
A 		26.6
(-3)
A 		82.6
(3)
A 		62.5
(0.8)
A 		80
(2.7)
A 		56
avr 60.1
(1.8) 		43.9
(-1) 		32.7
(-3) 		62.4
(2.2) 		50.6
(0.1) 		67
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 13
(3)
A 		0.7
(-3)
A 		10.2
(1.6)
A 		4.8
(-1)
A 		12
B 12.5
(2.1)
A 		9
(0.2)
A 		14.3
(3)
A 		2.9
(-3)
A 		11
C 11.3
(2.1)
A 		12.7
(3)
A 		8.3
(0.3)
A 		3.1
(-3)
A 		10
avr 12.3
(3) 		7.5
(-0.3) 		10.9
(2) 		3.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 19.8
(2.3)
A 		13.8
(-1.8)
A 		12.1
(-3)
A 		13.4
(-2.1)
A 		20.8
(3)
A 		20.3
(2.7)
A 		9
B 4.6
(-2.6)
A 		10.2
(0.7)
A 		3.9
(-3)
A 		13.7
(2.8)
A 		8.3
(-0.4)
A 		14
(3)
A 		10
C 22.1
(1.6)
A 		19.1
(0.7)
A 		6.8
(-3)
A 		16.6
(-0.1)
A 		20.2
(1)
A 		26.8
(3)
A 		20
avr 15.5
(0.7) 		14.4
(0.2) 		7.6
(-3) 		14.6
(0.3) 		16.4
(1.1) 		20.4
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18010
Sequence Type Exemplar sequence
Representative Public ID K09E3.7 NCBI
Target Description K09E3.7 /REP_DB=WormBase Gene ID /WP=CE04745 /TR=Q21401 /GB=AAA82378.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078374 NCBI Caenorhabditis elegans K09E3.7 (K09E3.7) mRNA, complete cds. 11/11 None
SNAP00000022143 ENSEMBL cdna:SNAP chromosome:CEL140:X:17131397:17134295:-1 11/11 None
GENEFINDER00000022147 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17131397:17134404:-1 11/11 None
K09E3.7 ENSEMBL cdna:known chromosome:CEL140:X:17131397:17134404:-1 gene:K09E3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17131396-17134404(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E3.7
Entrez Gene 187223 Entrez gene
SwissProt Q21401 EMBL-EBI
WormBase CE04745 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82378 Hypothetical protein K09E3.7 [Caenorhabditis elegans] ref|NP_510775.1| K09E3.7 [Caenorhabditis elegans] 0.0
blast AAB52884 Hypothetical protein T23C6.3 [Caenorhabditis elegans] ref|NP_510776.1| T23C6.3 [Caenorhabditis elegans] 1.0E-131
blast AAB52884 Hypothetical protein T23C6.3 [Caenorhabditis elegans] ref|NP_510776.1| T23C6.3 [Caenorhabditis elegans] 1.0E-126
blast CAE69700 Hypothetical protein CBG15957 [Caenorhabditis briggsae] 6.0E-63
Sequence
Target Sequence 
>C. ELEGANS:183584_AT
ttccttcaacgagctcaatgcctggaataatttcgttcccaaatactcgacacactattg
ctccgggagacgttgctccagccaattcactcactttgtttttgagagcaatagagcagc
aaagaaccgttcctgcctcaactttaaaacgggaagcctgttttgatagggtggacggtt
tgtcatacaagcgtggaaattttacgatcaatggaccactgcccacacaacttcgtggct
ctaacatggaagctaaacagtcacggttccctgtttggaatcagcatccaactatgccac
tctcctttacaccacaacctgttccatcaatgattccaccagtgatcacaccgaatcctt
caatgatctcgaggagcacaatgcctctaattatgtcgtatccaaacattctacccactg
ctgctccaggagccattgctcaaatcaattcaccaaccccatcaactttggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTTCAACGAGCTCAATGCCTGG 684 697 2051 Antisense
AAATACTCGACACACTATTGCTCCG 368 115 2091 Antisense
CCAGCCAATTCACTCACTTTGTTTT 594 273 2128 Antisense
GCAGCAAAGAACCGTTCCTGCCTCA 378 313 2166 Antisense
TTACGATCAATGGACCACTGCCCAC 122 683 2252 Antisense
TGCCCACACAACTTCGTGGCTCTAA 174 585 2270 Antisense
GAATCAGCATCCAACTATGCCACTC 662 327 2328 Antisense
CCACAACCTGTTCCATCAATGATTC 6 277 2362 Antisense
GTGATCACACCGAATCCTTCAATGA 590 483 2392 Antisense
TGTCGTATCCAAACATTCTACCCAC 20 559 2444 Antisense
ATTCACCAACCCCATCAACTTTGGG 426 11 2498 Antisense
Sequence Source Affymetrix Proprietary Database