[Home] | [Total List]

[183583_at]

Description C06E4.1 /REP_DB=WormBase Gene ID /WP=CE03949 /TR=Q17729 /GB=AAA82478.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.4
(0.1)
A 		5.1
(-2.2)
A 		3.7
(-3)
A 		14.7
(3)
A 		11
B 2.7
(-3)
A 		5.9
(-0.3)
A 		9.8
(3)
A 		7.9
(1.4)
A 		7
C 6.7
(-3)
A 		8
(-1.3)
A 		11.2
(3)
A 		6.8
(-2.9)
A 		5
avr 6.3
(-3) 		6.3
(-3) 		8.2
(0.3) 		9.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 4.7
(-3)
A 		4.7
(-3)
A 		25.5
(0.6)
A 		9.9
(-2.1)
A 		39.2
(3)
A 		11.2
(-1.9)
A 		35
B 5.4
(-1.6)
A 		10.3
(2.3)
A 		5.4
(-1.6)
A 		3.6
(-3)
A 		8.8
(1.1)
A 		11.2
(3)
A 		8
C 6.3
(-2.6)
A 		73.9
(3)
A 		2.2
(-3)
A 		6.1
(-2.7)
A 		9
(-2.4)
A 		2
(-3)
A 		72
avr 5.5
(-3) 		29.6
(3) 		11
(-1.6) 		6.5
(-2.8) 		19
(0.4) 		8.1
(-2.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.4
(3)
A 		1.1
(-2.8)
A 		1
(-3)
A 		2.2
(0)
A 		2
B 0.9
(-3)
A 		1.5
(-0.4)
A 		2.3
(3)
A 		1.7
(0.4)
A 		1
C 2.2
(-0.8)
A 		2.3
(-0.6)
A 		3.9
(3)
A 		1.2
(-3)
A 		3
avr 2.2
(1.5) 		1.6
(-3) 		2.4
(3) 		1.7
(-2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.7
(-2.6)
A 		5.5
(-0.5)
A 		2.5
(-2.1)
A 		11.8
(3)
A 		2.7
(-2)
A 		11
B 1.9
(-1.2)
A 		3.4
(1.5)
A 		1.3
(-2.3)
A 		0.9
(-3)
A 		3.6
(1.9)
A 		4.2
(3)
A 		3
C 2.3
(-2.5)
A 		22.5
(3)
A 		0.6
(-3)
A 		1.2
(-2.8)
A 		2.9
(-2.4)
A 		0.7
(-3)
A 		22
avr 1.7
(-2.8) 		9.2
(3) 		2.5
(-2.2) 		1.5
(-3) 		6.1
(0.6) 		2.5
(-2.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10204
Sequence Type Exemplar sequence
Representative Public ID C06E4.1 NCBI
Target Description C06E4.1 /REP_DB=WormBase Gene ID /WP=CE03949 /TR=Q17729 /GB=AAA82478.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068758 NCBI Caenorhabditis elegans C06E4.1 (C06E4.1) mRNA, complete cds. 11/11 None
SNAP00000041909 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7283349:7283853:1 10/11 None
GENEFINDER00000041916 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7283259:7283853:1 11/11 None
C06E4.1 ENSEMBL cdna:known chromosome:CEL140:IV:7283259:7283853:1 gene:C06E4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7283264-7283859(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E4.1
Entrez Gene 182324 Entrez gene
SwissProt Q17729 EMBL-EBI
WormBase CE03949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82478 Hypothetical protein C06E4.1 [Caenorhabditis elegans] ref|NP_501159.1| C06E4.1 [Caenorhabditis elegans] 3.0E-98
blast AAA82478 Hypothetical protein C06E4.1 [Caenorhabditis elegans] ref|NP_501159.1| C06E4.1 [Caenorhabditis elegans] 5.0E-82
blast CAE63806 Hypothetical protein CBG08352 [Caenorhabditis briggsae] 2.0E-36
blast CAE63806 Hypothetical protein CBG08352 [Caenorhabditis briggsae] 6.0E-36
blast AAB37621 Hypothetical protein C43E11.5 [Caenorhabditis elegans] ref|NP_491335.1| C43E11.5 [Caenorhabditis elegans] 1.0E-31
blast AAB37621 Hypothetical protein C43E11.5 [Caenorhabditis elegans] ref|NP_491335.1| C43E11.5 [Caenorhabditis elegans] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:183583_AT
tcagcctggttcacgattcgaaaattcaaatcaaatttcaaaattcagtttcatattttg
tagtatcaagaaaaatttcaagaagaatggctcgatcaaaatcaaaagaacgtgatgcga
aaaccaatcgtcgtaaaccatcttccaaaaataagtctggagcactttccggaaaagata
ttaaaaagtcatcagctgtatcagatggccagacccctgttgaattgacggatcagctca
caaaatccaagaatcgggctcacatgtacgaagccatcaaaggcacgagtgtttcaattg
ttcctgaatttttgaagtatttgcctgaaaatgtatggttgccggttccaatgaaagatg
ctcgacgctgtaaatttggaacagatgaggaatattttccagctcaatatgtcaatatgg
aagcttctgaatacattattgcgcaggctccaacacagaaaaattatggtttaatttgga
gaacagttcgcaaggtttgtctagtgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCCTGGTTCACGATTCGAAAAT 121 625 17 Antisense
ACCAATCGTCGTAAACCATCTTCCA 43 85 139 Antisense
ATAAGTCTGGAGCACTTTCCGGAAA 504 23 167 Antisense
CAGCTGTATCAGATGGCCAGACCCC 283 203 209 Antisense
GCCAGACCCCTGTTGAATTGACGGA 60 281 224 Antisense
ATCCAAGAATCGGGCTCACATGTAC 81 41 261 Antisense
GGCACGAGTGTTTCAATTGTTCCTG 500 535 298 Antisense
GTATGGTTGCCGGTTCCAATGAAAG 650 455 349 Antisense
GATGCTCGACGCTGTAAATTTGGAA 674 413 373 Antisense
ATACATTATTGCGCAGGCTCCAACA 676 23 447 Antisense
AGTTCGCAAGGTTTGTCTAGTGCTT 343 63 501 Antisense
Sequence Source Affymetrix Proprietary Database