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[183582_at]

Description C47E12.6 /REP_DB=WormBase Gene ID /WP=CE05450 /TR=Q18681 /GB=CAA93108.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 525
1 2 3 4 range
A 35.9
(-3)
A 		293.9
(0.7)
P 		459.8
(3)
P 		179.1
(-1)
P 		424
B 36
(-3)
A 		468.2
(3)
P 		416
(2.3)
P 		108.2
(-2)
P 		432
C 51.4
(-3)
A 		401.3
(1.1)
P 		560.5
(3)
P 		141.2
(-1.9)
P 		509
avr 41.1
(-3) 		387.8
(1.8) 		478.8
(3) 		142.8
(-1.6) 		438

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 425
1 2 3 4 5 6 range
A 93
(-3)
A 		318.2
(0.4)
P 		201
(-1.4)
P 		387.8
(1.5)
P 		487
(3)
P 		135.2
(-2.4)
P 		394
B 82.4
(-3)
A 		273.2
(-0.2)
P 		218.6
(-1)
P 		352.9
(1)
P 		484.7
(3)
P 		165.6
(-1.8)
P 		402
C 61.6
(-3)
A 		288.1
(0.7)
P 		204.5
(-0.7)
P 		426.6
(3)
P 		405.7
(2.7)
P 		119.6
(-2)
P 		365
avr 79
(-3) 		293.2
(0.4) 		208
(-1) 		389.1
(1.9) 		459.1
(3) 		140.1
(-2) 		380
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 13.1
(-3)
A 		63.8
(-0.2)
P 		120.2
(3)
P 		26.2
(-2.3)
P 		107
B 11.5
(-3)
A 		115.6
(3)
P 		96.4
(1.9)
P 		23.1
(-2.3)
P 		104
C 17
(-3)
A 		115.4
(0.3)
P 		195.3
(3)
P 		23.8
(-2.8)
P 		178
avr 13.9
(-3) 		98.3
(1.1) 		137.3
(3) 		24.4
(-2.5) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 17.1
(-3)
A 		113.2
(1.4)
P 		43.8
(-1.8)
P 		98.3
(0.8)
P 		147
(3)
P 		32.9
(-2.3)
P 		130
B 28.7
(-3)
A 		90.9
(-0.8)
P 		53.1
(-2.1)
P 		93.5
(-0.7)
P 		196.9
(3)
P 		61.8
(-1.8)
P 		168
C 22.8
(-3)
A 		87.9
(0.6)
P 		52.1
(-1.4)
P 		85.8
(0.5)
P 		131.3
(3)
P 		40
(-2)
P 		109
avr 22.9
(-3) 		97.3
(0.3) 		49.7
(-1.8) 		92.5
(0.1) 		158.4
(3) 		44.9
(-2) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9676
Sequence Type Exemplar sequence
Representative Public ID C47E12.6 NCBI
Target Description C47E12.6 /REP_DB=WormBase Gene ID /WP=CE05450 /TR=Q18681 /GB=CAA93108.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069398(11), NM_182303(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069398 NCBI Caenorhabditis elegans C47E12.6a (C47E12.6) mRNA, complete cds. 11/11 None
NM_182303 NCBI Caenorhabditis elegans C47E12.6b (C47E12.6) mRNA, complete cds. 11/11 None
SNAP00000021566 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9986133:9989422:1 9/11 None
GENEFINDER00000021594 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9983262:9989422:1 11/11 None
C47E12.6a ENSEMBL cdna:known chromosome:CEL140:IV:9983265:9989587:1 gene:C47E12.6 11/11 None
C47E12.6b ENSEMBL cdna:known chromosome:CEL140:IV:9986160:9989422:1 gene:C47E12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9986138-9989428(+) 100.0 100.0
Public Domain and Genome References
Ensembl C47E12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56234 Hypothetical protein C47E12.6a [Caenorhabditis elegans] ref|NP_501799.2| C47E12.6a [Caenorhabditis elegans] 0.0
blast T20010 hypothetical protein C47E12.6 - Caenorhabditis elegans 0.0
blast CAE59953 Hypothetical protein CBG03441 [Caenorhabditis briggsae] 0.0
blast CAD56233 Hypothetical protein C47E12.6b [Caenorhabditis elegans] ref|NP_872103.1| C47E12.6b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183582_AT
gtagatttgccacgtattcgtcgcccattccgtgttgctttttctgcagaagcagaagat
caaggaatggttctgattgataatatcgttgtgactggtcaaatttgtccaccaactgct
gcaagacagttttcttcgaaaactttccgtccaactgcggatatgcctgatccaaatgtt
tgcagacttttgtcgtgtgatttccatttggggcatgcttgtctttacgagagttcacaa
gtttcaaactctgcaatgcacggtgttgcaaatcgaaagttgaatgcattcctgacacgt
tcaaagagagtttttattctcgaatcaccacaatttcgattgaatacggtagcaaggcta
cactttgattacaaactacagggtgatgcgaatttattcatttgtaatgacagtgggaca
aaagaattagaaagttgttttaaagtcgaaggaagagaaggaaatgattatatcgaatta
ctggcaagtgatacaaaagtctacataatatctcgtctctctgaatctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGATTTGCCACGTATTCGTCGCC 694 453 1582 Antisense
ATTCCGTGTTGCTTTTTCTGCAGAA 336 9 1608 Antisense
ATTTGTCCACCAACTGCTGCAAGAC 108 19 1684 Antisense
CGTCCAACTGCGGATATGCCTGATC 272 245 1729 Antisense
AGACTTTTGTCGTGTGATTTCCATT 336 69 1765 Antisense
GATTTCCATTTGGGGCATGCTTGTC 11 429 1780 Antisense
GGCATGCTTGTCTTTACGAGAGTTC 242 537 1793 Antisense
CAAACTCTGCAATGCACGGTGTTGC 693 191 1826 Antisense
GTTGAATGCATTCCTGACACGTTCA 123 439 1860 Antisense
AAGTCTACATAATATCTCGTCTCTC 677 157 2078 Antisense
ATATCTCGTCTCTCTGAATCTGGAA 677 19 2089 Antisense
Sequence Source Affymetrix Proprietary Database