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[183581_at]

Description F48C1.5 /REP_DB=WormBase Gene ID /WP=CE10740 /TR=O01571 /GB=AAB52343.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_total > 88      4grp_total > 11      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 47.9
(-2.5)
P 		67.4
(-1.7)
P 		34.6
(-3)
P 		180.8
(3)
P 		146
B 45.6
(-2.8)
P 		79.3
(-1.5)
P 		39.1
(-3)
P 		198.3
(3)
P 		159
C 82
(-2)
P 		61.5
(-2.9)
P 		60.3
(-3)
P 		187.4
(3)
P 		127
avr 58.5
(-2.4) 		69.4
(-2) 		44.7
(-3) 		188.8
(3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 49.8
(-3)
A 		85.5
(-2)
P 		90.8
(-1.8)
P 		151
(-0.1)
P 		181.2
(0.8)
P 		256.3
(3)
P 		207
B 100.7
(-2.7)
P 		122.8
(-2.1)
P 		89.4
(-3)
P 		122
(-2.1)
P 		235.1
(0.9)
P 		312
(3)
P 		223
C 102.2
(-2.5)
P 		134.6
(-1.6)
P 		84.6
(-3)
P 		94.4
(-2.7)
P 		170.8
(-0.7)
P 		305.3
(3)
P 		221
avr 84.2
(-3) 		114.3
(-2.1) 		88.3
(-2.9) 		122.5
(-1.9) 		195.7
(0.2) 		291.2
(3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 17.4
(-0.1)
P 		14.6
(-1.1)
P 		9.1
(-3)
P 		26.5
(3)
P 		17
B 14.5
(-2)
P 		19.6
(-1.1)
P 		9.1
(-3)
P 		42.3
(3)
P 		33
C 27.1
(1.1)
P 		17.7
(-3)
P 		21
(-1.6)
P 		31.6
(3)
P 		14
avr 19.7
(-1.1) 		17.3
(-1.8) 		13.1
(-3) 		33.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 9.2
(-3)
A 		30.4
(-0.6)
P 		19.8
(-1.8)
P 		38.3
(0.3)
P 		54.7
(2.1)
P 		62.4
(3)
P 		53
B 35.1
(-2.2)
P 		40.9
(-1.8)
P 		21.7
(-3)
P 		32.3
(-2.3)
P 		95.5
(1.7)
P 		116.3
(3)
P 		95
C 37.9
(-1.6)
P 		41.1
(-1.4)
P 		21.5
(-2.8)
P 		19
(-3)
P 		55.3
(-0.4)
P 		102.2
(3)
P 		83
avr 27.4
(-2.5) 		37.5
(-1.6) 		21
(-3) 		29.9
(-2.3) 		68.5
(0.9) 		93.6
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.440
Sequence Type Exemplar sequence
Representative Public ID F48C1.5 NCBI
Target Description F48C1.5 /REP_DB=WormBase Gene ID /WP=CE10740 /TR=O01571 /GB=AAB52343.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059164 NCBI Caenorhabditis elegans F48C1.5 (F48C1.5) mRNA, complete cds. 11/11 None
SNAP00000025982 ENSEMBL cdna:SNAP chromosome:CEL140:I:5317640:5318113:-1 11/11 None
GENEFINDER00000025997 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5317640:5318113:-1 11/11 None
F48C1.5 ENSEMBL cdna:known chromosome:CEL140:I:5317640:5318113:-1 gene:F48C1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5317639-5318113(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48C1.5
Entrez Gene 185975 Entrez gene
SwissProt O01571 EMBL-EBI
WormBase CE10740 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52343 Hypothetical protein F48C1.5 [Caenorhabditis elegans] ref|NP_491565.1| F48C1.5 [Caenorhabditis elegans] 1.0E-54
blast CAE66944 Hypothetical protein CBG12336 [Caenorhabditis briggsae] 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:183581_AT
acgattggacctttaccgtgcaagaatcctgagagttttacgaagttgtccgcaaaaaaa
gatacagtacggaaaactgaacctgtcgaagtggtctgtcggaatgttgaaggcgagaat
aatggagaatgctacaaaataaaggcaccaaaaactccattcattatcaatcatttagag
aagaattatattccgaagccaaaagaaactacgaaaaaacgtcgagcaggcgaagctgga
ggtgtgaagcgagaacattcaacgtccgaatccgatgatcaactcgaggatgccaatcag
ccatcaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGATTGGACCTTTACCGTGCAAGA 129 93 25 Antisense
CCGTGCAAGAATCCTGAGAGTTTTA 78 265 40 Antisense
GAGAGTTTTACGAAGTTGTCCGCAA 251 395 55 Antisense
GAACCTGTCGAAGTGGTCTGTCGGA 702 345 103 Antisense
GTGGTCTGTCGGAATGTTGAAGGCG 502 489 115 Antisense
AAAACTCCATTCATTATCAATCATT 125 131 175 Antisense
AAAACGTCGAGCAGGCGAAGCTGGA 403 123 240 Antisense
GAAGCGAGAACATTCAACGTCCGAA 42 345 270 Antisense
AACGTCCGAATCCGATGATCAACTC 680 141 285 Antisense
GATGATCAACTCGAGGATGCCAATC 381 411 298 Antisense
GAGGATGCCAATCAGCCATCAACAT 570 403 310 Antisense
Sequence Source Affymetrix Proprietary Database