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[183580_at]

Description Y38H6A.1 /REP_DB=WormBase Gene ID /WP=CE19093 /TR=Q9XWT9 /GB=CAA21555.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 34.7
(-2.1)
A 		72.5
(0.7)
A 		21.7
(-3)
A 		105
(3)
A 		83
B 39.4
(1.1)
A 		44.5
(1.8)
A 		52.4
(3)
A 		12.4
(-3)
A 		40
C 73.1
(2.8)
A 		75.1
(3)
A 		6
(-3)
A 		50.5
(0.9)
A 		69
avr 49.1
(0.6) 		64
(3) 		26.7
(-3) 		56
(1.7) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 87.9
(2.1)
A 		101.3
(3)
A 		10.1
(-3)
A 		14.6
(-2.7)
A 		45.5
(-0.7)
A 		39.9
(-1)
A 		91
B 66.6
(1.9)
A 		79.9
(3)
A 		44.7
(0.2)
A 		19
(-1.9)
A 		22.9
(-1.6)
A 		5.4
(-3)
A 		75
C 62.7
(1.4)
A 		83.3
(3)
A 		19.1
(-2.1)
A 		60.4
(1.2)
A 		51.8
(0.5)
A 		7.6
(-3)
A 		76
avr 72.4
(1.7) 		88.2
(3) 		24.6
(-2.4) 		31.3
(-1.8) 		40.1
(-1.1) 		17.6
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 12.6
(1.1)
A 		15.7
(3)
A 		5.7
(-3)
A 		15.4
(2.8)
A 		10
B 12.6
(3)
A 		11
(2)
A 		12.1
(2.7)
A 		2.6
(-3)
A 		10
C 24.2
(3)
A 		21.6
(2.3)
A 		2.1
(-3)
A 		8.5
(-1.3)
A 		22
avr 16.5
(3) 		16.1
(2.8) 		6.6
(-3) 		8.8
(-1.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 16.2
(-0.5)
A 		36
(3)
A 		2.2
(-3)
A 		3.7
(-2.7)
A 		13.7
(-1)
A 		9.7
(-1.7)
A 		34
B 23.2
(2.2)
A 		26.6
(3)
A 		10.9
(-0.8)
A 		5
(-2.3)
A 		9.3
(-1.2)
A 		2
(-3)
A 		25
C 23.2
(2.4)
A 		25.4
(3)
A 		4.9
(-2.4)
A 		12.1
(-0.5)
A 		16.7
(0.7)
A 		2.6
(-3)
A 		23
avr 20.9
(0.9) 		29.3
(3) 		6
(-2.7) 		6.9
(-2.5) 		13.2
(-0.9) 		4.8
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13279
Sequence Type Exemplar sequence
Representative Public ID Y38H6A.1 NCBI
Target Description Y38H6A.1 /REP_DB=WormBase Gene ID /WP=CE19093 /TR=Q9XWT9 /GB=CAA21555.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075518 NCBI Caenorhabditis elegans Y38H6A.1 (Y38H6A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000031891 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20323779:20326597:1 10/11 None
Y38H6A.1 ENSEMBL cdna:known chromosome:CEL140:V:20323779:20326545:1 gene:Y38H6A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031887 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20323778-20326545(+) 87.06 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6A.1
Entrez Gene 189680 Entrez gene
SwissProt Q9XWT9 EMBL-EBI
WormBase CE19093 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21555 Hypothetical protein Y38H6A.1 [Caenorhabditis elegans] ref|NP_507919.1| Y38H6A.1 [Caenorhabditis elegans] 1.0E-108
blast CAE61676 Hypothetical protein CBG05619 [Caenorhabditis briggsae] 3.0E-73
blast CAA21555 Hypothetical protein Y38H6A.1 [Caenorhabditis elegans] ref|NP_507919.1| Y38H6A.1 [Caenorhabditis elegans] 5.0E-66
blast CAE61676 Hypothetical protein CBG05619 [Caenorhabditis briggsae] 4.0E-51
blast CAE63971 Hypothetical protein CBG08560 [Caenorhabditis briggsae] 6.0E-41
blast CAA99900 Hypothetical protein R11D1.3 [Caenorhabditis elegans] ref|NP_506174.1| R11D1.3 [Caenorhabditis elegans] 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:183580_AT
tgacccacagatttttgctgctccaactgatactacggctttgataacagttggcaagaa
ctgcattatcaacaactcgggctccaaagcgcttgctgcattgagtttgtacacaaatat
caacagttgcctcaacccggatgacattctcactttggctgaggggtgggccaccccatt
ccttaaactcacaaaaactctgaccaacaagattgttaaaaacttgaaagcctgcaaaaa
ggcaggtaccgcgcaggaagcgtgcctccagaagatgtacgtcaccgccaaggcagccat
cacaaaagcctacgtgaacaaaatttgcactaagtttgtgaaacagaatctgtctgcaaa
acaatacgcctgtgctatcaagtatgctccacaagtggttaccgttaccggctacaagtg
cgccacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACCCACAGATTTTTGCTGCTCCA 709 569 159 Antisense
TTGCTGCTCCAACTGATACTACGGC 571 701 173 Antisense
TGCATTATCAACAACTCGGGCTCCA 302 579 220 Antisense
GCTCCAAAGCGCTTGCTGCATTGAG 107 299 239 Antisense
TCAACCCGGATGACATTCTCACTTT 616 631 290 Antisense
GCTGAGGGGTGGGCCACCCCATTCC 708 293 316 Antisense
AAAAGGCAGGTACCGCGCAGGAAGC 229 131 395 Antisense
CCAGAAGATGTACGTCACCGCCAAG 395 273 426 Antisense
ACGCCTGTGCTATCAAGTATGCTCC 433 91 524 Antisense
GCTCCACAAGTGGTTACCGTTACCG 634 295 544 Antisense
TTACCGGCTACAAGTGCGCCACGGT 253 681 563 Antisense
Sequence Source Affymetrix Proprietary Database