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[183579_at]

Description Y48E1B.4 /REP_DB=WormBase Gene ID /WP=CE14858 /TR=O18198 /GB=CAB07690.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 49.8
(-3)
A 		64.2
(-1)
A 		58.8
(-1.8)
A 		93.3
(3)
A 		44
B 60.2
(-2.1)
A 		65.1
(3)
A 		59.3
(-3)
A 		60.1
(-2.2)
A 		6
C 52.6
(-2.6)
A 		63.9
(-1.5)
A 		48.9
(-3)
A 		109.1
(3)
A 		60
avr 54.2
(-3) 		64.4
(-1.2) 		55.7
(-2.7) 		87.5
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 53.7
(1.7)
A 		29
(-3)
A 		42.7
(-0.4)
A 		35.5
(-1.8)
A 		37.7
(-1.3)
A 		60.3
(3)
A 		31
B 40.2
(0.6)
A 		24.4
(-3)
A 		28.7
(-2)
A 		47.6
(2.3)
A 		47.9
(2.3)
A 		50.8
(3)
A 		26
C 44.8
(1.1)
A 		51.9
(2.1)
A 		14.9
(-3)
A 		55.1
(2.6)
A 		47.4
(1.5)
A 		58.2
(3)
A 		43
avr 46.2
(0.8) 		35.1
(-1.6) 		28.8
(-3) 		46.1
(0.8) 		44.3
(0.4) 		56.4
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 18.1
(3)
A 		13.9
(-2.7)
A 		15.4
(-0.7)
A 		13.7
(-3)
A 		4
B 19.2
(3)
A 		16.1
(0.1)
A 		13.7
(-2.2)
A 		12.8
(-3)
A 		6
C 17.4
(-1.3)
A 		18.4
(3)
A 		17
(-3)
A 		18.4
(3)
A 		1
avr 18.2
(3) 		16.1
(-0.9) 		15.4
(-2.3) 		15
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.9
(-2.1)
A 		10.3
(-1.6)
A 		9.3
(-2.7)
A 		9
(-3)
A 		11.4
(-0.5)
A 		14.7
(3)
A 		6
B 14
(0.4)
A 		8.1
(-2.5)
A 		7
(-3)
A 		12.6
(-0.3)
A 		19.5
(3)
A 		18.9
(2.7)
A 		13
C 16.6
(1.9)
A 		15.8
(1.6)
A 		3.8
(-3)
A 		11.1
(-0.2)
A 		15.3
(1.4)
A 		19.5
(3)
A 		16
avr 13.5
(0.7) 		11.4
(-0.4) 		6.7
(-3) 		10.9
(-0.7) 		15.4
(1.7) 		17.7
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2968
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.4 NCBI
Target Description Y48E1B.4 /REP_DB=WormBase Gene ID /WP=CE14858 /TR=O18198 /GB=CAB07690.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064448 NCBI Caenorhabditis elegans Y48E1B.4 (Y48E1B.4) mRNA, complete cds. 11/11 None
SNAP00000010059 ENSEMBL cdna:SNAP chromosome:CEL140:II:13533528:13585325:-1 11/11 None
GENEFINDER00000010075 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13554291:13564435:-1 10/11 None
Y48E1B.4 ENSEMBL cdna:known chromosome:CEL140:II:13557301:13567867:-1 gene:Y48E1B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13557297-13564432(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48E1B.4
Entrez Gene 3565482 Entrez gene
SwissProt O18198 EMBL-EBI
WormBase CE14858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07690 Hypothetical protein Y48E1B.4 [Caenorhabditis elegans] ref|NP_496849.1| Y48E1B.4 [Caenorhabditis elegans] 0.0
blast CAE73331 Hypothetical protein CBG20760 [Caenorhabditis briggsae] 0.0
blast CAB07689 Hypothetical protein Y48E1B.2a [Caenorhabditis elegans] ref|NP_496845.1| Y48E1B.2a [Caenorhabditis elegans] 0.0
blast CAE73333 Hypothetical protein CBG20762 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 0.015
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 0.011
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 5.2E-9
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 7.8E-4
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 0.049
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000010059 2 1554-1576,1588-1610
Sequence
Target Sequence 
>C. ELEGANS:183579_AT
aatgtgtactcaatcttctgtcaagaccagcttcaagtgctcaattcatcaatttcaatg
acaaaactctatgctcatccgacaggcgtctggtcttcagtcgacgctttccattccatc
ggagagcccgaaaatttcaatcaaatcgtccgccgcggcaaatacgcggaacccgaggtc
ccgagtgagcccacaagagcaatggatctcgtggagctctctgacttgaaatgctcattg
ctagtccgacaaactgatgatggagcaatttggtggcaaaagttttcgaatgagccggtg
aggactgaaaaagagcaattttcggagcagaaaaagagcttggaacggattattgaacgg
agaagccgtgagccggattcgtggaaacgagagccctggagaccggtttattcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTGTACTCAATCTTCTGTCAAG 463 163 1249 Antisense
GTCAAGACCAGCTTCAAGTGCTCAA 107 465 1268 Antisense
TGACAAAACTCTATGCTCATCCGAC 510 571 1307 Antisense
AGGCGTCTGGTCTTCAGTCGACGCT 91 55 1332 Antisense
TTTCCATTCCATCGGAGAGCCCGAA 165 667 1356 Antisense
AATCAAATCGTCCGCCGCGGCAAAT 429 171 1387 Antisense
GCGGCAAATACGCGGAACCCGAGGT 401 285 1403 Antisense
ATCTCGTGGAGCTCTCTGACTTGAA 334 33 1454 Antisense
TGAAATGCTCATTGCTAGTCCGACA 611 571 1475 Antisense
GGAGAAGCCGTGAGCCGGATTCGTG 441 517 1607 Antisense
GAGCCCTGGAGACCGGTTTATTCGG 671 385 1639 Antisense
Sequence Source Affymetrix Proprietary Database