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[183576_s_at]

Description K02F6.5 /REP_DB=WormBase Gene ID /WP=CE11664 /TR=O16631 /GB=AAB66105.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      6grp_total > 03      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 217.5
(0.5)
P 		202.1
(-0.4)
P 		157.3
(-3)
P 		260.7
(3)
A 		103
B 240.8
(3)
P 		214
(0.7)
P 		170
(-3)
P 		225.4
(1.7)
A 		71
C 269.4
(3)
P 		251.3
(2.1)
A 		148.1
(-3)
P 		264.9
(2.8)
M 		121
avr 242.6
(2.5) 		222.5
(1.2) 		158.5
(-3) 		250.3
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 207
(2)
P 		174.3
(-0.2)
P 		156.7
(-1.4)
P 		222.1
(3)
P 		133
(-3)
P 		181.1
(0.2)
P 		89
B 191.9
(2.2)
P 		203.2
(3)
P 		129.2
(-2.4)
P 		148
(-1)
P 		158.4
(-0.3)
P 		121.3
(-3)
P 		82
C 177.2
(1)
P 		157.7
(-0.4)
P 		157.8
(-0.4)
P 		207.3
(3)
P 		143.2
(-1.3)
P 		118.7
(-3)
M 		89
avr 192
(2.9) 		178.4
(1.4) 		147.9
(-2.1) 		192.5
(3) 		144.9
(-2.5) 		140.4
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 79.2
(3)
P 		43.9
(-2.2)
P 		41.1
(-2.6)
P 		38.2
(-3)
A 		41
B 76.8
(3)
P 		52.9
(-0.8)
P 		39.4
(-3)
P 		48
(-1.6)
A 		37
C 89.2
(3)
P 		72.2
(0.7)
A 		51.6
(-2.1)
P 		44.7
(-3)
M 		45
avr 81.7
(3) 		56.3
(-1) 		44
(-2.9) 		43.6
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 38.2
(-2.1)
P 		62
(3)
P 		34.1
(-3)
P 		56.3
(1.8)
P 		40.1
(-1.7)
P 		44.1
(-0.8)
P 		28
B 66.8
(2.9)
P 		67.6
(3)
P 		31.4
(-3)
P 		39.2
(-1.7)
P 		64.4
(2.5)
P 		45.2
(-0.7)
P 		36
C 65.7
(3)
P 		48.1
(-1.1)
P 		40.2
(-2.9)
P 		41.7
(-2.5)
P 		46.4
(-1.5)
P 		39.7
(-3)
M 		26
avr 56.9
(2.4) 		59.2
(3) 		35.2
(-3) 		45.7
(-0.4) 		50.3
(0.8) 		43
(-1.1) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183576_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4701
Sequence Type Exemplar sequence
Representative Public ID K02F6.5 NCBI
Target Description K02F6.5 /REP_DB=WormBase Gene ID /WP=CE11664 /TR=O16631 /GB=AAB66105.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061891(11), NM_061890(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061891 NCBI Caenorhabditis elegans K02F6.5 (K02F6.5) mRNA, complete cds. 11/11 None
NM_061890 NCBI Caenorhabditis elegans K02F6.8 (K02F6.8) mRNA, complete cds. 11/11 None
SNAP00000019489 ENSEMBL cdna:SNAP chromosome:CEL140:II:2533446:2534070:-1 9/11 None
SNAP00000019490 ENSEMBL cdna:SNAP chromosome:CEL140:II:2535627:2536251:1 9/11 None
GENEFINDER00000019501 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2535418:2544437:1 11/11 None
GENEFINDER00000019503 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2533446:2534279:-1 11/11 None
K02F6.8 ENSEMBL cdna:known chromosome:CEL140:II:2533446:2534279:-1 gene:K02F6.8 11/11 None
K02F6.5 ENSEMBL cdna:known chromosome:CEL140:II:2535418:2536251:1 gene:K02F6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2535381-2536250(+) 91.98 91.98
chrII:2533444-2534313(-) 91.85 91.85
Public Domain and Genome References
Gene Title

Ensembl K02F6.8
K02F6.5
Entrez Gene 186908 Entrez gene
186910 Entrez gene
SwissProt O16631 EMBL-EBI
O16630 EMBL-EBI
WormBase CE36875 Wormbase
CE11670 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66104 Hypothetical protein K02F6.4 [Caenorhabditis elegans] ref|NP_494293.1| K02F6.4 [Caenorhabditis elegans] 0.0
blast AAB66103 Hypothetical protein K02F6.3 [Caenorhabditis elegans] ref|NP_494294.2| K02F6.3 [Caenorhabditis elegans] 0.0
blast AAB66105 Hypothetical protein K02F6.5 [Caenorhabditis elegans] ref|NP_494292.2| K02F6.5 [Caenorhabditis elegans] 1.0E-132
blast AAB66106 Hypothetical protein K02F6.8 [Caenorhabditis elegans] ref|NP_494291.1| K02F6.8 [Caenorhabditis elegans] 1.0E-131
blast AAB66106 Hypothetical protein K02F6.8 [Caenorhabditis elegans] ref|NP_494291.1| K02F6.8 [Caenorhabditis elegans] 1.0E-130
blast AAB66105 Hypothetical protein K02F6.5 [Caenorhabditis elegans] ref|NP_494292.2| K02F6.5 [Caenorhabditis elegans] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 8.2E-40
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.2E-10
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.9E-24
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019501 1 974-996
Sequence
Target Sequence 
>C. ELEGANS:183576_S_AT
aaagacgagagctctaccactactcgtattgtcatcgaccggtcccccaaacactttgaa
acagttttgaacttcatgcgggacgggagcgtagatcttccagaatctctaaagcacctt
cggcagttgctcagagaagcgattttctacggcttagaaaagttgatagaatgttgtaag
caagcaatggcaacttctgagattgttgccgttgctccagaagagcctaaaagccctgac
acagtggttcccttattgtcagactaccaggttaacaacaacgatctgcagcacatggtc
cggatatgtggagacattttgagaaagcttggaaatcacaacattctcagtctcccatca
gtttatacatttgacgactacgtcaattatctcaagtcggtaacctccgcgatcattcct
gcagtttatgccagaatctccaattggcgacattatttcaagaaaagtgatgaagcacac
agttgtgttcaaaaaatcatccaatggatttacgcaatgttcgctggttttaatagacta
ccggctgccgtgcattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGACGAGAGCTCTACCACTACTC 556 121 205 Antisense
TACTCGTATTGTCATCGACCGGTCC 194 647 225 Antisense
TAAAGCACCTTCGGCAGTTGCTCAG 348 639 314 Antisense
AAAAGCCCTGACACAGTGGTTCCCT 529 131 433 Antisense
GTGGTTCCCTTATTGTCAGACTACC 574 489 448 Antisense
CAACGATCTGCAGCACATGGTCCGG 640 187 483 Antisense
GAAATCACAACATTCTCAGTCTCCC 195 363 536 Antisense
CTCAGTCTCCCATCAGTTTATACAT 263 229 550 Antisense
ATCTCAAGTCGGTAACCTCCGCGAT 122 31 593 Antisense
GGATTTACGCAATGTTCGCTGGTTT 140 509 710 Antisense
ATAGACTACCGGCTGCCGTGCATTG 44 23 737 Antisense
Sequence Source Affymetrix Proprietary Database