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[183575_at]

Description T14A8.2 /REP_DB=WormBase Gene ID /WP=CE07496 /TR=Q22473 /GB=AAA93438.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 0      4grp_high_8_8 > 45      6grp_highest_nonorm > 59      6grp_total > 93      4grp_total > 51      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1288
1 2 3 4 range
A 1979.3
(-1.3)
P 		2889.9
(3)
P 		2365.7
(0.5)
P 		1621
(-3)
P 		1269
B 2061
(-0)
P 		2528.5
(3)
P 		2281.7
(1.4)
P 		1602.3
(-3)
P 		926
C 1783.1
(-2.3)
P 		2376.6
(3)
P 		2056.3
(0.1)
P 		1706.6
(-3)
P 		670
avr 1941.1
(-1.1) 		2598.3
(3) 		2234.6
(0.7) 		1643.3
(-3) 		955

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4929
1 2 3 4 5 6 range
A 1688.4
(-3)
P 		2182.8
(-2.3)
P 		2302.2
(-2.2)
P 		3034.5
(-1.2)
P 		6130.9
(3)
P 		2296.7
(-2.2)
P 		4443
B 1648.1
(-3)
P 		2524.5
(-1.9)
P 		2047.1
(-2.5)
P 		2562.1
(-1.9)
P 		6520
(3)
P 		2602.7
(-1.8)
P 		4872
C 1590.8
(-3)
P 		2412.2
(-1.9)
P 		2172
(-2.2)
P 		3058.5
(-1.1)
P 		6154.1
(3)
P 		2529.3
(-1.8)
P 		4563
avr 1642.4
(-3) 		2373.2
(-2.1) 		2173.8
(-2.3) 		2885
(-1.4) 		6268.3
(3) 		2476.2
(-1.9) 		4626
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 483
1 2 3 4 range
A 720.7
(3)
P 		627.3
(1.8)
P 		618.4
(1.7)
P 		237.3
(-3)
P 		483
B 657.2
(3)
P 		624.5
(2.4)
P 		528.7
(0.6)
P 		341.5
(-3)
P 		316
C 590.3
(1.2)
P 		683.3
(2.5)
P 		716.7
(3)
P 		287.8
(-3)
P 		429
avr 656.1
(3) 		645
(2.8) 		621.3
(2.4) 		288.9
(-3) 		367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2338
1 2 3 4 5 6 range
A 311.2
(-3)
P 		776.3
(-1.2)
P 		501.4
(-2.3)
P 		769.6
(-1.2)
P 		1850
(3)
P 		559.2
(-2)
P 		1539
B 573.4
(-2.8)
P 		840.3
(-2)
P 		497.1
(-3)
P 		678.6
(-2.5)
P 		2649
(3)
P 		970.5
(-1.7)
P 		2152
C 589.6
(-2.8)
P 		736
(-2.2)
P 		552.8
(-3)
P 		615.1
(-2.7)
P 		1991.4
(3)
P 		846.7
(-1.8)
P 		1439
avr 491.4
(-3) 		784.2
(-1.9) 		517.1
(-2.9) 		687.8
(-2.3) 		2163.5
(3) 		792.1
(-1.9) 		1672
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183575_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9871
Sequence Type Exemplar sequence
Representative Public ID T14A8.2 NCBI
Target Description T14A8.2 /REP_DB=WormBase Gene ID /WP=CE07496 /TR=Q22473 /GB=AAA93438.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068899(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068899 NCBI Caenorhabditis elegans T14A8.2 (T14A8.2) mRNA, complete cds. 10/11 None
SNAP00000022673 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7821746:7822596:-1 10/11 None
GENEFINDER00000022675 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7821746:7822596:-1 10/11 None
T14A8.2 ENSEMBL cdna:known chromosome:CEL140:IV:7821672:7822683:-1 gene:T14A8.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7821751-7822689(-) 95.71 100.0
Public Domain and Genome References
Gene Title
Ensembl T14A8.2
Entrez Gene 188490 Entrez gene
SwissProt Q22473 EMBL-EBI
WormBase CE29475 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93438 Hypothetical protein T14A8.2 [Caenorhabditis elegans] ref|NP_501300.1| T14A8.2 [Caenorhabditis elegans] 2.0E-55
blast AAA93438 Hypothetical protein T14A8.2 [Caenorhabditis elegans] ref|NP_501300.1| T14A8.2 [Caenorhabditis elegans] 3.0E-37
blast CAE70891 Hypothetical protein CBG17682 [Caenorhabditis briggsae] 2.0E-17
blast CAE70891 Hypothetical protein CBG17682 [Caenorhabditis briggsae] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:183575_AT
aatcattgatcgtcttggcacttcttgcaatttcagcacttgccagtccaagtctccgac
acgagagagctccaggaccacagacagaggcaattggtgagtttcagaaagcggcagtgt
gcttttattactcatcattttttggaacacctcttacttccgaaaaattctatatttcag
ttcaatatggaacaactgcagaactcggaccaggagatgacactccagctcaattcgaag
aagaagcatccggagaagaagaagatcaccatgaacatcatatggaagcttctggtgaag
ctccagttgattcttcctcgacagcgccaatgagttccgatgagccaaagattgaagaaa
ccaccgaagaaaccactgaagagaccccagttctatccaaagagccagaagttgaggagt
cgaagccaattgaagctgccactgttgtgagcgctgttgaagatcaaccatcaacatcag
aaacttcatcaagctcttctgaagagccatcaacatcttcagagactccagtttcatcag
caac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATTGATCGTCTTGGCACTTCT 327 171 113 Antisense
TGGCACTTCTTGCAATTTCAGCACT 702 545 128 Antisense
TTCAGCACTTGCCAGTCCAAGTCTC 8 685 144 Antisense
CGACACGAGAGAGCTCCAGGACCAC 18 253 169 Antisense
GCGGCAGTGTGCTTTTATTACTCAT 5 295 223 Antisense
GAACAACTGCAGAACTCGGACCAGG 357 353 302 Antisense
GACACTCCAGCTCAATTCGAAGAAG 209 367 331 Antisense
CAGCGCCAATGAGTTCCGATGAGCC 86 203 434 Antisense
TGAAGAGACCCCAGTTCTATCCAAA 43 573 489 Antisense
TGAAGCTGCCACTGTTGTGAGCGCT 556 571 543 Antisense
CAGAGACTCCAGTTTCATCAGCAAC 530 205 632 Antisense
Sequence Source Affymetrix Proprietary Database