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[183574_at]

Description W07B3.1 /REP_DB=WormBase Gene ID /WP=CE26026 /TR=Q9TZ41 /GB=AAK71404.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 102.9
(3)
A 		6
(-3)
A 		24
(-1.9)
A 		66.3
(0.7)
A 		97
B 43
(3)
A 		20.2
(-0.4)
A 		3.2
(-3)
A 		10.1
(-2)
A 		40
C 36.3
(0.8)
A 		49.5
(2.6)
A 		9.4
(-3)
A 		52.2
(3)
A 		43
avr 60.7
(3) 		25.2
(-1.4) 		12.2
(-3) 		42.9
(0.8) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 7.8
(-2.6)
A 		38.1
(3)
A 		5.9
(-3)
A 		7.7
(-2.7)
A 		5.9
(-3)
A 		8
(-2.6)
A 		32
B 41.2
(2.7)
A 		22.3
(-0.4)
A 		43.2
(3)
A 		6.3
(-3)
A 		13.1
(-1.9)
A 		37
(2)
A 		37
C 7.2
(-2.1)
A 		10.5
(-1.1)
A 		22.8
(3)
A 		4.6
(-3)
A 		5.7
(-2.6)
A 		6.4
(-2.4)
A 		18
avr 18.7
(1.2) 		23.6
(2.9) 		24
(3) 		6.2
(-3) 		8.2
(-2.3) 		17.1
(0.7) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 37.5
(3)
A 		1.3
(-3)
A 		6.3
(-2.2)
A 		9.7
(-1.6)
A 		36
B 13.7
(3)
A 		5
(-1)
A 		0.7
(-3)
A 		2.2
(-2.3)
A 		13
C 12
(1.8)
A 		14.2
(3)
A 		3.3
(-3)
A 		8.8
(0)
A 		11
avr 21.1
(3) 		6.8
(-1.8) 		3.4
(-3) 		6.9
(-1.8) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(-3)
A 		13.6
(3)
A 		1.3
(-3)
A 		2
(-2.7)
A 		1.8
(-2.8)
A 		1.9
(-2.7)
A 		12
B 14.3
(3)
A 		7.4
(-0.3)
A 		10.5
(1.2)
A 		1.7
(-3)
A 		5.3
(-1.3)
A 		13.8
(2.8)
A 		13
C 2.7
(-0.8)
A 		3.2
(-0.2)
A 		5.8
(3)
A 		0.9
(-3)
A 		1.9
(-1.8)
A 		2.1
(-1.5)
A 		5
avr 6.1
(1.2) 		8.1
(3) 		5.9
(1) 		1.5
(-3) 		3
(-1.6) 		5.9
(1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183574_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8112
Sequence Type Exemplar sequence
Representative Public ID W07B3.1 NCBI
Target Description W07B3.1 /REP_DB=WormBase Gene ID /WP=CE26026 /TR=Q9TZ41 /GB=AAK71404.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064785 NCBI Caenorhabditis elegans Y50D7A.8 (Y50D7A.8) mRNA, complete cds. 11/11 None
SNAP00000043169 ENSEMBL cdna:SNAP chromosome:CEL140:III:340253:343221:-1 11/11 None
GENEFINDER00000043171 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:340253:343221:-1 11/11 None
Y50D7A.8 ENSEMBL cdna:known chromosome:CEL140:III:335955:343240:-1 gene:Y50D7A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:341428-343221(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50D7A.8
Entrez Gene 175194 Entrez gene
SwissProt Q9N3K5 EMBL-EBI
WormBase CE30029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59643 Hypothetical protein Y50D7A.8 [Caenorhabditis elegans] ref|NP_497186.2| Y50D7A.8 [Caenorhabditis elegans] 1.0E-144
blast AAF59643 Hypothetical protein Y50D7A.8 [Caenorhabditis elegans] ref|NP_497186.2| Y50D7A.8 [Caenorhabditis elegans] 2.0E-64
blast CAE69500 Hypothetical protein CBG15708 [Caenorhabditis briggsae] 4.0E-45
blast AAP82634 Gex interacting protein protein 4, isoform c [Caenorhabditis elegans] ref|NP_497189.2| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 8.0E-29
blast C88379 protein W07B3.1 [imported] - Caenorhabditis elegans pir||T33657 hypothetical protein W07B3.1 - Caenorhabditis elegans (fragment) 3.0E-24
Sequence
Target Sequence 
>C. ELEGANS:183574_AT
gacgacgatgatgatccatactaccatcaatccacgtcatcatcggaggttgcagaacct
tccacgtcgtctgcggtctatccagaagtttacagtcagaaaatgatacctggcactggt
ggaccgacgattcccggcgcggcgaatactcttccctgcattgtacaagccgatcaaatg
aatgcctttatggattcctactttggagatgcttttatgaacactgcagaaccttcaaaa
ccacaaaaccttctaaattctcttcattcttcaaaatcgcaggccgaggaagacttggag
accctgatgaaggaaactgatgatatgcaagatattcaggatcagattcatatggaacaa
atcgaaatggccgacaaatatcgagaagaacgttcgaaacagaaacgggcggccgcggcg
aggtctcgatatcaacggatgacggaaaatgagcggagggtctataatcatcgacggcgt
ctgaaacaactcggcgtggatccagagcatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGACGATGATGATCCATACTACC 682 379 25 Antisense
CCACGTCATCATCGGAGGTTGCAGA 706 271 56 Antisense
GTCGTCTGCGGTCTATCCAGAAGTT 699 471 90 Antisense
ATGATACCTGGCACTGGTGGACCGA 256 47 127 Antisense
TTCCCTGCATTGTACAAGCCGATCA 182 697 176 Antisense
GAATGCCTTTATGGATTCCTACTTT 392 329 204 Antisense
AAACCTTCTAAATTCTCTTCATTCT 664 125 270 Antisense
GGCGAGGTCTCGATATCAACGGATG 64 543 441 Antisense
GGGTCTATAATCATCGACGGCGTCT 188 497 482 Antisense
GACGGCGTCTGAAACAACTCGGCGT 516 375 497 Antisense
AACTCGGCGTGGATCCAGAGCATGG 125 141 512 Antisense
Sequence Source Affymetrix Proprietary Database