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[183573_s_at]

Description T25D1.2 /REP_DB=WormBase Gene ID /WP=CE05018 /TR=Q22778 /GB=AAA82465.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 7.3
(-3)
A 		23.1
(-0.3)
A 		41.9
(3)
A 		39.6
(2.6)
A 		35
B 40.3
(3)
A 		29.1
(1)
A 		27.7
(0.8)
A 		6.2
(-3)
A 		34
C 38.4
(-0.5)
A 		8.6
(-3)
A 		29.6
(-1.2)
A 		79.9
(3)
P 		71
avr 28.7
(-0.7) 		20.3
(-3) 		33.1
(0.6) 		41.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 11.4
(-2.7)
A 		10.3
(-3)
A 		25.3
(0.6)
A 		34.8
(2.9)
A 		20.9
(-0.5)
A 		35.3
(3)
A 		25
B 28
(0.2)
A 		30.6
(0.8)
A 		35.9
(2)
A 		27.6
(0.1)
A 		40.6
(3)
A 		13.4
(-3)
A 		27
C 46.3
(2.4)
A 		49
(3)
A 		36.2
(0.2)
A 		44.3
(2)
A 		22.4
(-2.8)
A 		21.6
(-3)
A 		27
avr 28.6
(-0.4) 		30
(0.2) 		32.5
(1.5) 		35.6
(3) 		28
(-0.7) 		23.4
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.7
(-3)
A 		5
(-1.3)
A 		11
(3)
A 		5.8
(-0.8)
A 		8
B 12.9
(3)
A 		7.2
(0.1)
A 		6.4
(-0.4)
A 		1.3
(-3)
A 		12
C 12.7
(2.6)
A 		2.5
(-3)
A 		10.3
(1.3)
A 		13.5
(3)
P 		11
avr 9.4
(3) 		4.9
(-3) 		9.2
(2.7) 		6.9
(-0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.1
(-3)
A 		3.7
(-1.6)
A 		5.5
(0)
A 		8.8
(3)
A 		6.3
(0.8)
A 		8.6
(2.8)
A 		7
B 9.8
(-0.5)
A 		10.2
(-0.3)
A 		8.7
(-1.1)
A 		7.3
(-1.8)
A 		16.5
(3)
A 		5
(-3)
A 		12
C 17.2
(3)
A 		14.9
(1.6)
A 		9.2
(-1.8)
A 		8.9
(-2)
A 		7.2
(-3)
A 		7.2
(-3)
A 		10
avr 9.7
(2.4) 		9.6
(2.2) 		7.8
(-1.3) 		8.3
(-0.3) 		10
(3) 		6.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183573_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17616
Sequence Type Exemplar sequence
Representative Public ID T25D1.2 NCBI
Target Description T25D1.2 /REP_DB=WormBase Gene ID /WP=CE05018 /TR=Q22778 /GB=AAA82465.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078277(11), NM_075910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078277 NCBI Caenorhabditis elegans T25D1.2 (T25D1.2) mRNA, complete cds. 11/11 None
NM_075910 NCBI Caenorhabditis elegans C36C9.4 (C36C9.4) mRNA, complete cds. 11/11 A 
SNAP00000025926 ENSEMBL cdna:SNAP chromosome:CEL140:X:16515478:16519088:1 11/11 None
GENEFINDER00000025929 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16515478:16519345:1 11/11 None
SNAP00000005674 ENSEMBL cdna:SNAP chromosome:CEL140:X:1692966:1696974:-1 11/11 None
GENEFINDER00000005678 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1693689:1696974:-1 11/11 None
C36C9.4 ENSEMBL cdna:known chromosome:CEL140:X:1692133:1696974:-1 gene:C36C9.4 11/11 A 
T25D1.2 ENSEMBL cdna:known chromosome:CEL140:X:16515478:16517631:1 gene:T25D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16515477-16517631(+) 100.0 100.0
chrX:1694984-1697169(-) 92.94 92.94
Public Domain and Genome References
Gene Title

Ensembl C36C9.4
T25D1.2
Entrez Gene 183274 Entrez gene
188890 Entrez gene
SwissProt Q9TZK7 EMBL-EBI
Q22778 EMBL-EBI
WormBase CE19723 Wormbase
CE05018 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82465 Hypothetical protein T25D1.2 [Caenorhabditis elegans] ref|NP_510678.1| T25D1.2 [Caenorhabditis elegans] 0.0
blast NP_508311 C36C9.4 [Caenorhabditis elegans] gb|AAC67426.1| Hypothetical protein C36C9.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183573_S_AT
aacctggctagtccatttttctctagtttccgagaaactgaatctccgaatcgtcttcgt
ctgtccttggtcgtatcgattgacggagtgcgcatttctggaaataagaagaagctttgg
ccagtcagttacatcatcgttgatctgccaactggactgatgcagaagtctacaaacatt
gtactaggtggaattgtagagtgtagtgaaaatccaactacaactctgtggaatgcactt
attccgttcatactatctgatgtagaatcacattctggaaaagtcagaaatacatcattc
acttgccacattcgaacatgctcagccgatcagcccgcaaagcgggctttctttggtttc
atggcacatcagtcggcagagtcatgttttttttgtatgtcgccaggaactttgtacaag
tttggtgatcgaaaacgccgtgaggaacgcccaggatatgaaacaatcgtagattcagag
cagggtgtgcatggttttggtccaattccagcaaaaattgttccccacgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCTGGCTAGTCCATTTTTCTCTA 339 147 718 Antisense
GAAACTGAATCTCCGAATCGTCTTC 109 357 751 Antisense
TTCGTCTGTCCTTGGTCGTATCGAT 492 695 773 Antisense
GATTGACGGAGTGCGCATTTCTGGA 246 435 795 Antisense
GAAGCTTTGGCCAGTCAGTTACATC 16 343 828 Antisense
GCACTTATTCCGTTCATACTATCTG 551 315 952 Antisense
AAATACATCATTCACTTGCCACATT 481 117 1005 Antisense
TCATGGCACATCAGTCGGCAGAGTC 363 623 1076 Antisense
GTATGTCGCCAGGAACTTTGTACAA 123 455 1112 Antisense
AGCAGGGTGTGCATGGTTTTGGTCC 28 77 1196 Antisense
TCCAGCAAAAATTGTTCCCCACGTT 120 587 1224 Antisense
Sequence Source Affymetrix Proprietary Database