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[183572_at]

Description F58E2.2 /REP_DB=WormBase Gene ID /WP=CE17130 /TR=Q9TYZ6 /GB=AAC68965.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 33.9
(-2.8)
A 		32.6
(-3)
A 		35.2
(-2.6)
P 		69.6
(3)
A 		37
B 19.7
(-1.3)
P 		51.7
(3)
P 		6.8
(-3)
A 		24.6
(-0.6)
A 		45
C 21.1
(-0.4)
A 		30.8
(1.6)
A 		9
(-3)
A 		37.2
(3)
A 		28
avr 24.9
(-1.2) 		38.4
(1.8) 		17
(-3) 		43.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 10.4
(-1.2)
A 		20.2
(0.9)
A 		24.8
(1.9)
A 		3.2
(-2.7)
A 		29.7
(3)
A 		1.9
(-3)
A 		28
B 23.1
(0.3)
A 		29.8
(1.4)
A 		40
(3)
A 		3
(-3)
A 		27.5
(1)
P 		2.7
(-3)
A 		37
C 27.9
(0.9)
A 		40.4
(3)
A 		24.5
(0.4)
A 		4.1
(-3)
A 		26.5
(0.7)
A 		22.7
(0.1)
A 		36
avr 20.5
(0.8) 		30.1
(3) 		29.8
(2.9) 		3.4
(-3) 		27.9
(2.5) 		9.1
(-1.7) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.4
(3)
A 		7.1
(-3)
A 		9.2
(-0.6)
P 		10.2
(0.5)
A 		5
B 6.3
(-0.5)
P 		12.8
(3)
P 		1.6
(-3)
A 		5.2
(-1.1)
A 		11
C 7
(1)
A 		8.9
(3)
A 		3.2
(-3)
A 		6.3
(0.3)
A 		6
avr 8.6
(1.8) 		9.6
(3) 		4.7
(-3) 		7.2
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.9
(-2)
A 		7.2
(1.7)
A 		5.4
(0.5)
A 		0.8
(-2.8)
A 		9
(3)
A 		0.5
(-3)
A 		9
B 8.1
(1.2)
A 		9.9
(2.3)
A 		9.7
(2.1)
A 		0.8
(-3)
A 		11.2
(3)
P 		1
(-2.9)
A 		10
C 10.3
(2)
A 		12.3
(3)
A 		6.2
(-0.2)
A 		0.8
(-3)
A 		8.6
(1.1)
A 		7.6
(0.5)
A 		12
avr 6.8
(1) 		9.8
(3) 		7.1
(1.2) 		0.8
(-3) 		9.6
(2.9) 		3
(-1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11142
Sequence Type Exemplar sequence
Representative Public ID F58E2.2 NCBI
Target Description F58E2.2 /REP_DB=WormBase Gene ID /WP=CE17130 /TR=Q9TYZ6 /GB=AAC68965.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067953 NCBI Caenorhabditis elegans F58E2.2 (F58E2.2) mRNA, complete cds. 11/11 None
SNAP00000029898 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3470039:3470708:1 11/11 None
GENEFINDER00000029902 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3470039:3470708:1 11/11 None
F58E2.2 ENSEMBL cdna:known chromosome:CEL140:IV:3470039:3470708:1 gene:F58E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3470044-3470714(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E2.2
Entrez Gene 186519 Entrez gene
SwissProt Q9TYZ6 EMBL-EBI
WormBase CE17130 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68965 Hypothetical protein F58E2.2 [Caenorhabditis elegans] ref|NP_500354.1| F58E2.2 [Caenorhabditis elegans] 5.0E-70
blast CAB05239 Hypothetical protein K03D3.2 [Caenorhabditis elegans] ref|NP_502944.1| K03D3.2 [Caenorhabditis elegans] 1.0E-55
blast CAE57822 Hypothetical protein CBG00846 [Caenorhabditis briggsae] 8.0E-9
Sequence
Target Sequence 
>C. ELEGANS:183572_AT
actctcattctattcctcttaataatttcttactcccgacaactggtcgctgaatcggaa
atcgtggattttgttacagccggatcagactataactacagtatagacttcactggcgga
gagaagacagtgggaataagaagattgctaaatggcgatgacgatgacaaatggcaattc
tatcatttctgtgcaaaagctaaaagcgcgaataagaagaattgcggatcgtgggttgac
ggaaagggtaacaaaatcaaaggagaagtaaccctcaaagcaactctcaagggcaagaat
atcgtgatgagtccagttttagttagagatgaagcacgttatgcaagcatcttcgaggac
tcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTCATTCTATTCCTCTTAATAA 192 101 19 Antisense
TAATTTCTTACTCCCGACAACTGGT 123 635 41 Antisense
GACAACTGGTCGCTGAATCGGAAAT 547 363 56 Antisense
TCGTGGATTTTGTTACAGCCGGATC 7 605 80 Antisense
CAGCCGGATCAGACTATAACTACAG 681 201 95 Antisense
GTATAGACTTCACTGGCGGAGAGAA 379 453 119 Antisense
AATTCTATCATTTCTGTGCAAAAGC 259 175 194 Antisense
GAAGAATTGCGGATCGTGGGTTGAC 599 339 234 Antisense
GAAGTAACCCTCAAAGCAACTCTCA 365 335 283 Antisense
GAATATCGTGATGAGTCCAGTTTTA 579 325 315 Antisense
ATGCAAGCATCTTCGAGGACTCGGA 83 43 359 Antisense
Sequence Source Affymetrix Proprietary Database