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[183571_at]

Description F56B3.8 /REP_DB=WormBase Gene ID /WP=CE27173 /TR=O45110 /GB=AAK29833.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 29      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 75      6grp_total > 39      4grp_total > 40      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 460
1 2 3 4 range
A 852.1
(-3)
P 		1138.7
(1.6)
P 		1226.1
(3)
P 		1139.5
(1.6)
P 		374
B 917.1
(-3)
P 		923.5
(-2.9)
P 		1197.9
(3)
P 		1075
(0.4)
P 		281
C 766
(-3)
P 		1044.1
(1.6)
P 		1127.1
(3)
P 		949.7
(0.1)
P 		361
avr 845.1
(-3) 		1035.4
(0.4) 		1183.7
(3) 		1054.7
(0.7) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 955.5
(3)
P 		790.5
(-0.5)
P 		804.7
(-0.2)
P 		675.8
(-3)
P 		779.6
(-0.8)
P 		842.3
(0.6)
P 		280
B 703.9
(-3)
P 		858.6
(1.1)
P 		932.4
(3)
P 		715.6
(-2.7)
P 		899.7
(2.1)
P 		837.1
(0.5)
P 		229
C 881.4
(1.6)
P 		947.3
(3)
P 		706.4
(-2.1)
P 		665.5
(-3)
P 		805.8
(-0)
P 		864.4
(1.2)
P 		282
avr 846.9
(2.4) 		865.5
(3) 		814.5
(1.3) 		685.6
(-3) 		828.4
(1.8) 		847.9
(2.4) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 310.3
(2.6)
P 		247.2
(0.1)
P 		320.5
(3)
P 		166.8
(-3)
P 		154
B 292.4
(3)
P 		228.1
(-3)
P 		277.6
(1.6)
P 		229.1
(-2.9)
P 		64
C 253.6
(-0.6)
P 		300.2
(0.6)
P 		392.8
(3)
P 		160.1
(-3)
P 		233
avr 285.4
(1.1) 		258.5
(0) 		330.3
(3) 		185.3
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 176.1
(-2.7)
P 		281.2
(3)
P 		175.3
(-2.8)
P 		171.4
(-3)
P 		235.3
(0.5)
P 		205.1
(-1.2)
P 		110
B 244.9
(-1.1)
P 		285.8
(0.3)
P 		226.4
(-1.7)
P 		189.5
(-3)
P 		365.5
(3)
P 		312.2
(1.2)
P 		176
C 326.7
(3)
P 		289.1
(1.8)
P 		179.8
(-1.6)
P 		133.8
(-3)
P 		260.7
(0.9)
P 		289.4
(1.8)
P 		193
avr 249.2
(1.1) 		285.4
(2.9) 		193.8
(-1.6) 		164.9
(-3) 		287.2
(3) 		268.9
(2.1) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183571_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11188
Sequence Type Exemplar sequence
Representative Public ID F56B3.8 NCBI
Target Description F56B3.8 /REP_DB=WormBase Gene ID /WP=CE27173 /TR=O45110 /GB=AAK29833.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067586(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067586 NCBI Caenorhabditis elegans F56B3.8 (F56B3.8) mRNA, complete cds. 9/11 None
SNAP00000041565 ENSEMBL cdna:SNAP chromosome:CEL140:IV:773237:776543:1 9/11 None
GENEFINDER00000041572 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:773237:777574:1 11/11 None
F56B3.8 ENSEMBL cdna:known chromosome:CEL140:IV:773237:776628:1 gene:F56B3.8 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:773367-776549(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56B3.8
Entrez Gene 176903 Entrez gene
SwissProt O45110 EMBL-EBI
WormBase CE34320 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602646_AT similar to mitochondrial ribosomal protein L2 cfa
CANINE_2:CFA.6251.1.S1_S_AT similar to mitochondrial ribosomal protein L2 cfa
CANINE_2:CFAAFFX.3573.1.S1_AT similar to mitochondrial ribosomal protein L2 cfa
DROSOPHILA_2:1624278_AT mitochondrial ribosomal protein L2 dm
DROSGENOME1:148557_AT mitochondrial ribosomal protein L2 dm
CHICKEN:GGA.16064.1.S1_A_AT similar to mitochondrial ribosomal protein L2 gga
HG-U133_PLUS_2:218887_AT mitochondrial ribosomal protein L2 hs
HG-U133A:218887_AT mitochondrial ribosomal protein L2 hs
HG-U133A_2:218887_AT mitochondrial ribosomal protein L2 hs
HU35KSUBC:RC_N94366_S_AT mitochondrial ribosomal protein L2 hs
HU35KSUBC:RC_AA291402_AT mitochondrial ribosomal protein L2 hs
U133_X3P:G7705713_3P_AT mitochondrial ribosomal protein L2 hs
U133_X3P:HS.55041.1.S1_3P_X_AT mitochondrial ribosomal protein L2 hs
U133_X3P:HS.55041.1.S1_3P_A_AT mitochondrial ribosomal protein L2 hs
HG-U133_PLUS_2:229884_S_AT mitochondrial ribosomal protein L2 hs
HG-U133B:229884_S_AT mitochondrial ribosomal protein L2 hs
HG-U95B:53102_S_AT mitochondrial ribosomal protein L2 hs
HG-U95B:53104_R_AT mitochondrial ribosomal protein L2 hs
HG-U95C:64442_AT mitochondrial ribosomal protein L2 hs
MU11KSUBA:C76397_RC_AT mitochondrial ribosomal protein L2 mm
MU11KSUBA:C76397_RC_G_AT mitochondrial ribosomal protein L2 mm
MG-U74AV2:95067_AT mitochondrial ribosomal protein L2 mm
MG-U74AV2:161910_AT mitochondrial ribosomal protein L2 mm
MOE430A:1448811_AT mitochondrial ribosomal protein L2 mm
MOUSE430A_2:1448811_AT mitochondrial ribosomal protein L2 mm
MOUSE430_2:1448811_AT mitochondrial ribosomal protein L2 mm
MU19KSUBA:TC23848_AT Mitochondrial ribosomal protein L2, mRNA (cDNA clone MGC:35778 IMAGE:5353459) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29833 Hypothetical protein F56B3.8 [Caenorhabditis elegans] ref|NP_499987.2| F56B3.8 [Caenorhabditis elegans] 0.0
blast CAE56261 Hypothetical protein CBG23904 [Caenorhabditis briggsae] 1.0E-176
blast AAK29833 Hypothetical protein F56B3.8 [Caenorhabditis elegans] ref|NP_499987.2| F56B3.8 [Caenorhabditis elegans] 1.0E-173
blast CAE56261 Hypothetical protein CBG23904 [Caenorhabditis briggsae] 1.0E-160
blast EAA07137 ENSANGP00000025078 [Anopheles gambiae str. PEST] ref|XP_311498.2| ENSANGP00000025078 [Anopheles gambiae str. PEST] 6.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002171 EMBL-EBI Ribosomal protein L2 9.9E-14
Pfam IPR002171 EMBL-EBI Ribosomal protein L2 2.1E-17
Pfam IPR002171 EMBL-EBI Ribosomal protein L2 6.1E-13
Pfam IPR002171 EMBL-EBI Ribosomal protein L2 9.9E-14
Sequence
Target Sequence 
>C. ELEGANS:183571_AT
aaatcgcatttctggctcaaaaccgagccggtgacgtcatctcaacaagcggacatttgt
ctgaaaatccagtgattggagtcgaaggaaatgcgtatccaattggatctttggctgctg
gaactaaaaattctcaatttgttttgttagaaaagtctgaaatttctccactttccagca
tcgaacgctacccaacaatggattcggaaacatttgtaaaagccgccggaacttcagcaa
caattgttcgtcatcagggagattttacagttgttaagctcccacataaacatgaattct
cactccatcgcacatgtatggccacagttggacgactttcacacgctgatattgatggaa
aaatctttggatcggcacagatgcatagaagattcggatacaaaatgtcctctggcctat
tccataaaaaagacggttactttggccgtaaagtccgtgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGCATTTCTGGCTCAAAACCG 169 119 470 Antisense
AAAACCGAGCCGGTGACGTCATCTC 318 131 488 Antisense
GACGTCATCTCAACAAGCGGACATT 83 379 502 Antisense
CATCGAACGCTACCCAACAATGGAT 18 211 648 Antisense
TAAAAGCCGCCGGAACTTCAGCAAC 3 641 686 Antisense
GCAACAATTGTTCGTCATCAGGGAG 218 319 706 Antisense
TTTACAGTTGTTAAGCTCCCACATA 484 673 733 Antisense
CTCACTCCATCGCACATGTATGGCC 455 227 768 Antisense
GACGACTTTCACACGCTGATATTGA 48 381 800 Antisense
TGTCCTCTGGCCTATTCCATAAAAA 619 557 875 Antisense
ACTTTGGCCGTAAAGTCCGTGCACT 492 99 908 Antisense
Sequence Source Affymetrix Proprietary Database