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[183570_at]

Description W06H8.4 /REP_DB=WormBase Gene ID /WP=CE21265 /TR=Q9N5C1 /GB=AAF39976.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 2.3
(-3)
A 		10
(3)
A 		2.3
(-3)
A 		5.5
(-0.5)
A 		8
B 1.9
(-3)
A 		3.6
(-0.6)
A 		6.2
(3)
A 		3.4
(-0.9)
A 		4
C 3.1
(-3)
A 		7.8
(-2)
A 		3.2
(-3)
A 		32.2
(3)
A 		29
avr 2.4
(-3) 		7.1
(-0.5) 		3.9
(-2.2) 		13.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5
(-1.7)
A 		4.8
(-1.9)
A 		11.4
(2.8)
A 		8.6
(0.8)
A 		3.2
(-3)
A 		11.7
(3)
A 		9
B 7.9
(0.1)
A 		13.5
(3)
A 		1.8
(-3)
A 		4.4
(-1.7)
A 		3.7
(-2)
A 		2
(-2.9)
A 		12
C 3.5
(-2.6)
A 		6
(-1.4)
A 		2.6
(-3)
A 		6.6
(-1.1)
A 		15.2
(3)
A 		11.3
(1.1)
A 		13
avr 5.5
(-2.6) 		8.1
(2.6) 		5.3
(-3) 		6.5
(-0.6) 		7.4
(1.2) 		8.3
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.8
(-2.3)
A 		2.2
(3)
A 		0.6
(-3)
A 		0.8
(-2.3)
A 		2
B 0.6
(-3)
A 		0.9
(-0.8)
A 		1.4
(3)
A 		0.7
(-2.3)
A 		1
C 1
(-3)
A 		2.3
(-1.2)
A 		1.1
(-2.9)
A 		5.4
(3)
A 		4
avr 0.8
(-3) 		1.8
(1) 		1
(-2.2) 		2.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.7
(-0.6)
A 		2.5
(1.8)
A 		2.2
(0.9)
A 		1
(-2.7)
A 		2.9
(3)
A 		2
B 2.8
(0.5)
A 		4.5
(3)
A 		0.4
(-3)
A 		1.2
(-1.8)
A 		1.5
(-1.4)
A 		0.8
(-2.4)
A 		4
C 1.3
(-2.1)
A 		1.8
(-1.4)
A 		0.7
(-3)
A 		1.3
(-2.1)
A 		4.9
(3)
A 		3.8
(1.4)
A 		4
avr 1.7
(-1) 		2.7
(3) 		1.2
(-3) 		1.6
(-1.4) 		2.5
(2.2) 		2.5
(2.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11606
Sequence Type Exemplar sequence
Representative Public ID W06H8.4 NCBI
Target Description W06H8.4 /REP_DB=WormBase Gene ID /WP=CE21265 /TR=Q9N5C1 /GB=AAF39976.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072187 NCBI Caenorhabditis elegans W06H8.4 (W06H8.4) mRNA, complete cds. 11/11 None
SNAP00000002853 ENSEMBL cdna:SNAP chromosome:CEL140:V:6207469:6208728:-1 11/11 None
GENEFINDER00000002864 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6207469:6208728:-1 11/11 None
W06H8.4 ENSEMBL cdna:known chromosome:CEL140:V:6207469:6208728:-1 gene:W06H8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6207468-6208728(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06H8.4
Entrez Gene 189269 Entrez gene
SwissProt Q9N5C1 EMBL-EBI
WormBase CE21265 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39976 Hypothetical protein W06H8.4 [Caenorhabditis elegans] ref|NP_504588.1| W06H8.4 [Caenorhabditis elegans] 0.0
blast CAE71843 Hypothetical protein CBG18885 [Caenorhabditis briggsae] 2.0E-40
blast AAB52472 Hypothetical protein T10E9.4 [Caenorhabditis elegans] ref|NP_491879.1| T10E9.4 [Caenorhabditis elegans] 2.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504588.1 1 231-253
W06H8.4 1 231-253
SNAP00000002853 1 231-253
GENEFINDER00000002864 1 231-253
Sequence
Target Sequence 
>C. ELEGANS:183570_AT
agagcattgctgtccgaattttcactacattaccaacgagccgcttcgacctccaactca
cttttacacaagtaattattcgtgtgagccaggagatccaattccctctggatttcattt
cgcctattgttcgaatgtctccaaaacaattgcttatttgggtgtcgttgacagttgtgg
atatatttgtgcctggattgtggatggtggagtgtgtttcaggaatccggagctttgttc
agtatacttatcatattaccatgttgtattttcattcacatttgcgtctcttctcttcat
gctcctctactttttatcaaaagcaatttatgagtatccagagaaattcagcaaaatgct
tccatttttggaatggcaactattcgatgtgacattgaaaagtcaagaaaaagcattgga
aatctataaaccaacggaaatgtcgccagatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCATTGCTGTCCGAATTTTCAC 462 69 456 Antisense
TTTCACTACATTACCAACGAGCCGC 5 673 475 Antisense
ACCTCCAACTCACTTTTACACAAGT 57 89 504 Antisense
TGAGCCAGGAGATCCAATTCCCTCT 16 571 540 Antisense
AATTCCCTCTGGATTTCATTTCGCC 39 179 555 Antisense
TCGCCTATTGTTCGAATGTCTCCAA 349 599 575 Antisense
AATTGCTTATTTGGGTGTCGTTGAC 591 177 603 Antisense
GTGGATATATTTGTGCCTGGATTGT 49 491 632 Antisense
GTGTGTTTCAGGAATCCGGAGCTTT 310 487 667 Antisense
CGGAGCTTTGTTCAGTATACTTATC 29 243 683 Antisense
ACCAACGGAAATGTCGCCAGATCAG 280 83 885 Antisense
Sequence Source Affymetrix Proprietary Database