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[183569_at]

Description C33G8.4 /REP_DB=WormBase Gene ID /WP=CE06913 /TR=Q18399 /GB=AAC25850.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 66      6grp_total > 33      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 738
1 2 3 4 range
A 1917
(2.4)
P 		1632.2
(-1.1)
P 		1479.5
(-3)
P 		1969.6
(3)
P 		490
B 2030.1
(2.4)
P 		1472.4
(-3)
P 		1494.2
(-2.8)
P 		2094.1
(3)
P 		622
C 1856.3
(3)
P 		1571.4
(-0.4)
P 		1355.7
(-3)
P 		1821.6
(2.6)
P 		501
avr 1934.5
(2.7) 		1558.7
(-1.7) 		1443.1
(-3) 		1961.8
(3) 		519

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1254
1 2 3 4 5 6 range
A 1558.3
(2.8)
P 		1475.3
(2.2)
P 		1577.2
(3)
P 		1582
(3)
P 		741.6
(-3)
P 		983.4
(-1.3)
P 		840
B 1383.2
(0.9)
P 		1403.8
(1.1)
P 		1665
(3)
P 		1328.6
(0.5)
P 		944.6
(-2.4)
P 		859.9
(-3)
P 		805
C 1995.8
(3)
P 		1366.9
(-1.1)
P 		1522.7
(-0.1)
P 		1328.9
(-1.3)
P 		1075.9
(-3)
P 		1192.9
(-2.2)
P 		920
avr 1645.8
(3) 		1415.3
(1.1) 		1588.3
(2.5) 		1413.2
(1.1) 		920.7
(-3) 		1012.1
(-2.2) 		725
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 410
1 2 3 4 range
A 698
(3)
P 		354.3
(-2)
P 		386.8
(-1.6)
P 		288.3
(-3)
P 		410
B 647.4
(3)
P 		363.6
(-2.7)
P 		346.2
(-3)
P 		446.2
(-1)
P 		301
C 614.5
(3)
P 		451.8
(-0.2)
P 		472.5
(0.2)
P 		307.1
(-3)
P 		307
avr 653.3
(3) 		389.9
(-2.2) 		401.8
(-1.9) 		347.2
(-3) 		306

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 516
1 2 3 4 5 6 range
A 287.3
(-1.7)
P 		524.7
(3)
P 		343.5
(-0.6)
P 		401.2
(0.5)
P 		223.8
(-3)
P 		239.4
(-2.7)
P 		301
B 481.3
(3)
P 		467.3
(2.5)
P 		404.3
(0.1)
P 		351.9
(-1.8)
P 		383.8
(-0.6)
P 		320.6
(-3)
P 		161
C 739.8
(3)
P 		417.1
(-1.1)
P 		387.6
(-1.5)
P 		267.2
(-3)
P 		348.1
(-2)
P 		399.3
(-1.3)
P 		473
avr 502.8
(3) 		469.7
(1.9) 		378.5
(-1) 		340.1
(-2.3) 		318.6
(-3) 		319.8
(-3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11603
Sequence Type Exemplar sequence
Representative Public ID C33G8.4 NCBI
Target Description C33G8.4 /REP_DB=WormBase Gene ID /WP=CE06913 /TR=Q18399 /GB=AAC25850.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072372 NCBI Caenorhabditis elegans C33G8.4 (C33G8.4) mRNA, complete cds. 11/11 None
SNAP00000000534 ENSEMBL cdna:SNAP chromosome:CEL140:V:7008934:7009306:1 11/11 None
GENEFINDER00000000548 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7008934:7009306:1 11/11 None
C33G8.4 ENSEMBL cdna:known chromosome:CEL140:V:7008906:7009409:1 gene:C33G8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7008934-7009307(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33G8.4
Entrez Gene 183176 Entrez gene
SwissProt Q18399 EMBL-EBI
WormBase CE06913 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25850 Hypothetical protein C33G8.4 [Caenorhabditis elegans] ref|NP_504773.1| C33G8.4 [Caenorhabditis elegans] 8.0E-45
blast CAE71988 Hypothetical protein CBG19063 [Caenorhabditis briggsae] 5.0E-19
blast CAE71990 Hypothetical protein CBG19065 [Caenorhabditis briggsae] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:183569_AT
gccctcctttttacggcaatttctgtctatgcaggagctccaacagccgaggaagcaaaa
gctgaagtagttgccgccggtgtctctgaggccgccgctgatggaattttaaagattgcg
gagacctacaagggccaattcgaggcagcaaaaggtgatcgggaagctggaaagaatgtt
tttcacacattccacgcagaggttgataagtacatggaaacacaatcggaagacgaccag
attgcttacaaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCTCCTTTTTACGGCAATTTCTG 682 283 31 Antisense
TACGGCAATTTCTGTCTATGCAGGA 380 645 42 Antisense
TCTATGCAGGAGCTCCAACAGCCGA 590 613 56 Antisense
AAAAGCTGAAGTAGTTGCCGCCGGT 21 131 87 Antisense
AGGCCGCCGCTGATGGAATTTTAAA 125 49 119 Antisense
GATTGCGGAGACCTACAAGGGCCAA 699 433 144 Antisense
CCTACAAGGGCCAATTCGAGGCAGC 27 269 155 Antisense
GAGGCAGCAAAAGGTGATCGGGAAG 405 405 172 Antisense
AATGTTTTTCACACATTCCACGCAG 671 163 205 Antisense
CACACATTCCACGCAGAGGTTGATA 670 193 214 Antisense
AAGACGACCAGATTGCTTACAAGGC 267 153 260 Antisense
Sequence Source Affymetrix Proprietary Database