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[183565_at] 7TM receptor, srbc family

Description T05E12.2 /REP_DB=WormBase Gene ID /WP=CE16347 /TR=O45752 /GB=CAB04682.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 10      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 13.8
(-2)
A 		31.8
(-0)
A 		4.2
(-3)
A 		60.3
(3)
A 		56
B 2
(-3)
A 		5.2
(-2.4)
A 		8.9
(-1.8)
A 		35.6
(3)
A 		34
C 3.9
(-2.9)
A 		3.4
(-3)
A 		6.4
(-2.5)
A 		41.4
(3)
A 		38
avr 6.6
(-3) 		13.5
(-1.9) 		6.5
(-3) 		45.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 3
(-2.4)
A 		2
(-2.9)
A 		14.2
(3)
A 		1.7
(-3)
A 		8.3
(0.2)
A 		8.3
(0.2)
A 		13
B 7.4
(-2)
A 		3.6
(-2.8)
A 		34.3
(3)
A 		22.9
(0.9)
A 		6.6
(-2.2)
A 		2.3
(-3)
A 		32
C 2.3
(-3)
A 		5.2
(-2.2)
A 		25.3
(3)
A 		24.5
(2.8)
A 		4.1
(-2.5)
A 		2.5
(-2.9)
A 		23
avr 4.2
(-2.8) 		3.6
(-3) 		24.6
(3) 		16.4
(0.7) 		6.3
(-2.2) 		4.4
(-2.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5
(0)
A 		6.9
(1.5)
A 		1.1
(-3)
A 		8.8
(3)
A 		8
B 0.6
(-3)
A 		1.3
(-2.4)
A 		2.1
(-1.7)
A 		7.6
(3)
A 		7
C 1.3
(-2.7)
A 		1
(-3)
A 		2.2
(-1.8)
A 		7
(3)
A 		6
avr 2.3
(-2.5) 		3.1
(-1.7) 		1.8
(-3) 		7.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-2.6)
A 		0.7
(-2.3)
A 		3.1
(3)
A 		0.4
(-3)
A 		2.5
(1.7)
A 		2
(0.6)
A 		3
B 2.6
(-1.6)
A 		1.2
(-2.7)
A 		8.3
(3)
A 		6.1
(1.2)
A 		2.7
(-1.5)
A 		0.8
(-3)
A 		8
C 0.8
(-3)
A 		1.6
(-2.1)
A 		6.4
(3)
A 		4.9
(1.4)
A 		1.3
(-2.5)
A 		0.8
(-3)
A 		6
avr 1.3
(-2.9) 		1.2
(-3) 		5.9
(3) 		3.8
(0.3) 		2.2
(-1.7) 		1.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14523
Sequence Type Exemplar sequence
Representative Public ID T05E12.2 NCBI
Target Description T05E12.2 /REP_DB=WormBase Gene ID /WP=CE16347 /TR=O45752 /GB=CAB04682.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074921 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-14) (srbc-14) mRNA, complete cds. 11/11 None
GENEFINDER00000044447 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17073105:17074256:-1 11/11 None
T05E12.2 ENSEMBL cdna:known chromosome:CEL140:V:17073105:17074256:-1 gene:T05E12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17073104-17074256(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-14
Ensembl T05E12.2
Entrez Gene 188135 Entrez gene
SwissProt O45752 EMBL-EBI
WormBase CE38100 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04682 Hypothetical protein T05E12.2 [Caenorhabditis elegans] ref|NP_507322.2| Serpentine Receptor, class BC (class B-like) family member (srbc-14) [Caenorhabditis elegans] 1.0E-155
blast AAC25879 Serpentine receptor, class bc (class b-like) protein 19 [Caenorhabditis elegans] ref|NP_503588.1| Serpentine Receptor, class BC (class B-like) family member (srbc-19) [Caenorhabditis elegans] 9.0E-69
blast CAE74168 Hypothetical protein CBG21841 [Caenorhabditis briggsae] 3.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.3E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507322.2 6 12-34,54-76,128-150,184-206,218-240,250-272
T05E12.2 6 12-34,54-76,128-150,184-206,218-240,250-272
GENEFINDER00000044447 6 12-34,54-76,128-150,184-206,218-240,250-272
Sequence
Target Sequence 
>C. ELEGANS:183565_AT
gacattcgtcgttgtttttgctgtttttcatgaggaacttgcgcctttgcaaaacttttt
tttctatcttggcctgccgagttccaatttggagactgccaggtcgattatttcactggc
aattgcggtggagagggtggtggccgcctatattcccatatacttttacaagtatcgtcc
tatatttccaacatttatcattttcattttgtctatttgcattgggctcaacgaagacgt
ttttctatttgtgttttgcgaattttctctccaaattcgaccaaactgtgccgcttttgg
ctgttctatcaacgcatgtttcttgaaattttggacatcttataaagcagcaaattgtct
agctcttattaatgctggaaatgtgtgcttattcgaatttttcccaaacatgtttgcaat
tcacttttccagtatttcatttttcagtttccagaacattggcccttacatagttgttgc
aaagcttcttggctgtgctattgaagcagttctggtatctcgaacactcatcaaaaagaa
cgggaagcttaactcaatatcgagccgttccggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTCGTCGTTGTTTTTGCTGTT 249 371 213 Antisense
TTCATGAGGAACTTGCGCCTTTGCA 402 687 239 Antisense
GAGACTGCCAGGTCGATTATTTCAC 692 393 304 Antisense
AGTATCGTCCTATATTTCCAACATT 46 63 383 Antisense
TGTGTTTTGCGAATTTTCTCTCCAA 374 555 462 Antisense
CAAATTCGACCAAACTGTGCCGCTT 206 193 484 Antisense
CGCTTTTGGCTGTTCTATCAACGCA 448 255 504 Antisense
CATGTTTGCAATTCACTTTTCCAGT 533 209 621 Antisense
GTTGCAAAGCTTCTTGGCTGTGCTA 449 439 688 Antisense
TCTGGTATCTCGAACACTCATCAAA 702 607 723 Antisense
TAACTCAATATCGAGCCGTTCCGGG 201 639 762 Antisense
Sequence Source Affymetrix Proprietary Database