[Home] | [Total List]

[183564_at]

Description C50A2.4 /REP_DB=WormBase Gene ID /WP=CE17582 /TR=O44138 /GB=AAB88319.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.3
(-2.8)
A 		11.6
(-0.2)
A 		5.8
(-3)
A 		18.2
(3)
A 		12
B 6.8
(-0.6)
A 		10.4
(3)
A 		4.4
(-3)
A 		7.6
(0.2)
A 		6
C 10.2
(-1.8)
A 		12
(-0.7)
A 		8.3
(-3)
A 		17.8
(3)
A 		10
avr 7.8
(-1.8) 		11.3
(0.7) 		6.2
(-3) 		14.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 11.1
(3)
A 		10
(2)
A 		9.1
(1.2)
A 		6.4
(-1.2)
A 		4.4
(-3)
A 		4.4
(-3)
A 		7
B 8.8
(3)
A 		6.4
(-0.4)
A 		6
(-1)
A 		6.3
(-0.6)
A 		8
(1.9)
A 		4.6
(-3)
A 		4
C 8.4
(2.2)
A 		9.2
(3)
A 		3.4
(-3)
A 		7.4
(1.1)
A 		8.1
(1.9)
A 		3.9
(-2.5)
A 		6
avr 9.4
(3) 		8.5
(1.9) 		6.2
(-0.8) 		6.7
(-0.2) 		6.8
(-0.1) 		4.3
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.3
(1)
A 		2.5
(2)
A 		1.5
(-3)
A 		2.7
(3)
A 		1
B 2.2
(1.5)
A 		2.6
(3)
A 		1
(-3)
A 		1.6
(-0.8)
A 		2
C 3.4
(3)
A 		3.4
(3)
A 		2.9
(-3)
A 		3
(-1.8)
A 		1
avr 2.6
(1.8) 		2.8
(3) 		1.8
(-3) 		2.4
(0.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2
(-0.8)
A 		3.6
(3)
A 		2
(-0.8)
A 		1.6
(-1.8)
A 		1.3
(-2.5)
A 		1.1
(-3)
A 		3
B 3.1
(2.6)
A 		2.1
(-0.9)
A 		1.5
(-3)
A 		1.7
(-2.3)
A 		3.2
(3)
A 		1.7
(-2.3)
A 		2
C 3.1
(3)
A 		2.8
(2.2)
A 		0.9
(-3)
A 		1.5
(-1.4)
A 		2.6
(1.6)
A 		1.3
(-1.9)
A 		2
avr 2.7
(2.6) 		2.8
(3) 		1.5
(-2.6) 		1.6
(-2.1) 		2.4
(1.3) 		1.4
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10651
Sequence Type Exemplar sequence
Representative Public ID C50A2.4 NCBI
Target Description C50A2.4 /REP_DB=WormBase Gene ID /WP=CE17582 /TR=O44138 /GB=AAB88319.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067645 NCBI Caenorhabditis elegans C50A2.4 (C50A2.4) mRNA, complete cds. 11/11 None
C50A2.4 ENSEMBL cdna:known chromosome:CEL140:IV:1159690:1161545:-1 gene:C50A2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019680 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1159695-1161551(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50A2.4
Entrez Gene 183631 Entrez gene
SwissProt O44138 EMBL-EBI
WormBase CE17582 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB88319 Hypothetical protein C50A2.4 [Caenorhabditis elegans] ref|NP_500046.1| C50A2.4 [Caenorhabditis elegans] 1.0E-100
blast CAE68274 Hypothetical protein CBG13954 [Caenorhabditis briggsae] 5.0E-33
blast AAH44973 Elf-1-prov protein [Xenopus laevis] 7.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR000418 EMBL-EBI Ets-domain 1.1E-23
Sequence
Target Sequence 
>C. ELEGANS:183564_AT
aaaaatctcacctatcttatccgtccagcggctccagacaccataaaatttaataccatc
tccacactctgcaattttacagtttcggctctttttcacaacatggtctccagcacccac
ctggagccaggtaaccaggaaaaccgaaaccccaaaaatccacgtagcacttctcataaa
aaattgcggaattacttgtttcaaatgattttaaagtcagaaaacgacaaaaatgtagcg
aaaatcataaaatggacgaaaaaatcgagtttagagttccaaatggttgatcgacaggag
gtggcgaggctttggggtgctgaaaaaggaaatctgaaaatggattatgaattcttgtcg
agaagtatcagatcttattataaatctggaataatgagaaaaattcccggaaaggacttc
cgctaccagtttattgcagactcctggacatcggctcaactggcacagcataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAATCTCACCTATCTTATCCGTC 549 129 28 Antisense
CAGCGGCTCCAGACACCATAAAATT 332 203 53 Antisense
AAAATTTAATACCATCTCCACACTC 515 133 72 Antisense
TTTACAGTTTCGGCTCTTTTTCACA 403 673 103 Antisense
GGCTCTTTTTCACAACATGGTCTCC 195 539 114 Antisense
AGCACCCACCTGGAGCCAGGTAACC 172 69 139 Antisense
AAAATCCACGTAGCACTTCTCATAA 645 131 182 Antisense
CAGGAGGTGGCGAGGCTTTGGGGTG 301 207 322 Antisense
CTTCCGCTACCAGTTTATTGCAGAC 43 221 444 Antisense
TATTGCAGACTCCTGGACATCGGCT 146 665 459 Antisense
CATCGGCTCAACTGGCACAGCATAA 37 213 476 Antisense
Sequence Source Affymetrix Proprietary Database