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[183562_s_at]

Description K02B2.4 /REP_DB=WormBase Gene ID /WP=CE04690 /GEN=inx-7 /GB=AAK39244.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 83      6grp_total > 97      4grp_total > 22      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 493
(3)
P 		300.4
(-2.3)
P 		276.1
(-3)
P 		386.5
(0.1)
P 		217
B 364
(-0.7)
P 		300.2
(-3)
P 		299.6
(-3)
P 		466
(3)
P 		166
C 383.4
(0.5)
P 		342.3
(-2.3)
P 		332.3
(-3)
P 		420.2
(3)
P 		88
avr 413.5
(2.5) 		314.3
(-2.4) 		302.7
(-3) 		424.2
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 327.3
(-2.6)
P 		394.8
(-0.9)
P 		310
(-3)
P 		412.1
(-0.5)
P 		498.2
(1.6)
P 		557.5
(3)
P 		248
B 345.4
(-3)
P 		395.5
(-1.4)
P 		371.3
(-2.2)
P 		389.4
(-1.6)
P 		455.6
(0.4)
P 		538.3
(3)
P 		193
C 333.6
(-2.4)
P 		306.2
(-3)
P 		375.1
(-1.5)
P 		415.6
(-0.6)
P 		451.3
(0.2)
P 		574.7
(3)
P 		269
avr 335.4
(-3) 		365.5
(-2.2) 		352.1
(-2.5) 		405.7
(-1.1) 		468.4
(0.6) 		556.8
(3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 179.5
(3)
P 		65.2
(-2.6)
P 		72.2
(-2.2)
P 		56.6
(-3)
P 		123
B 116.1
(3)
P 		74.1
(-2.4)
P 		69.4
(-3)
P 		99.3
(0.8)
P 		47
C 126.9
(3)
P 		98.4
(-0)
P 		115.8
(1.8)
P 		70.8
(-3)
P 		56
avr 140.8
(3) 		79.2
(-2.7) 		85.8
(-2.1) 		75.6
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 60.3
(-3)
P 		140.4
(2.3)
P 		67.5
(-2.5)
P 		104.5
(-0.1)
P 		150.3
(3)
P 		135.7
(2)
P 		90
B 120.2
(-1.4)
P 		131.7
(-0.7)
P 		90.2
(-3)
P 		103.1
(-2.3)
P 		185.1
(2.2)
P 		200.7
(3)
P 		111
C 123.6
(-0.8)
P 		93.4
(-2.5)
P 		95.5
(-2.3)
P 		83.6
(-3)
P 		146
(0.4)
P 		192.4
(3)
P 		109
avr 101.4
(-1.9) 		121.8
(-0.6) 		84.4
(-3) 		97.1
(-2.2) 		160.5
(2) 		176.3
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183562_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11251
Sequence Type Exemplar sequence
Representative Public ID K02B2.4 NCBI
Target Description K02B2.4 /REP_DB=WormBase Gene ID /WP=CE04690 /GEN=inx-7 /GB=AAK39244.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068493 NCBI Caenorhabditis elegans INneXin family member (inx-7) (inx-7) mRNA, complete cds. 11/11 None
SNAP00000017501 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5944155:5946614:-1 11/11 None
GENEFINDER00000017504 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5944155:5946614:-1 11/11 None
K02B2.4 ENSEMBL cdna:known chromosome:CEL140:IV:5943965:5946663:-1 gene:K02B2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5944160-5946620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol inx-7
Ensembl K02B2.4
Entrez Gene 177364 Entrez gene
SwissProt Q21123 EMBL-EBI
WormBase CE04690 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39244 Innexin protein 7 [Caenorhabditis elegans] ref|NP_500894.1| INneXin family member (inx-7) [Caenorhabditis elegans] sp|Q21123|INX7_CAEEL Innexin-7 0.0
blast CAE64682 Hypothetical protein CBG09460 [Caenorhabditis briggsae] 0.0
blast AAT81186 Innexin protein 10, isoform b [Caenorhabditis elegans] ref|NP_001024140.1| INneXin family member (inx-10) [Caenorhabditis elegans] 4.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500894.1 4 21-43,121-143,211-233,314-336
K02B2.4 4 21-43,121-143,211-233,314-336
SNAP00000017501 4 21-43,121-143,211-233,314-336
GENEFINDER00000017504 4 21-43,121-143,211-233,314-336
Sequence
Target Sequence 
>C. ELEGANS:183562_S_AT
gaacatgtcactcgattcatcactctttatctcggaactgacggtctatttcttctccag
ctcattgctcagcatgcggatgtagttttcaccactgaactgattgctgcacttttcaaa
acttacattgaaatagaagcacagagagcaactctcaaacaaatgaatgcagttctcccg
ctgcttcgcccgaatgatgaatctcaggtggaaagtggaaaaaatacagctccatctaca
agccataatgttagacgtcgtggaacagagcaattagagaaaaatgtcaaatctagacaa
ggatcactatcaacacaacttcgtccgttcaacagcttcgaagaaccggatcaaccgacg
aaaaagttcgatgatagcagtagtgaggatgagaatagcaaaaagggaagcaaaaagcca
agtccaacaaaaaagaaggcttcatcgaagaatagtcctcaatcttcgtcaaattctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATGTCACTCGATTCATCACTC 292 351 1108 Antisense
GATTCATCACTCTTTATCTCGGAAC 526 431 1121 Antisense
GGAACTGACGGTCTATTTCTTCTCC 697 529 1141 Antisense
TCCAGCTCATTGCTCAGCATGCGGA 98 589 1163 Antisense
GCGGATGTAGTTTTCACCACTGAAC 485 293 1183 Antisense
ACCACTGAACTGATTGCTGCACTTT 535 85 1198 Antisense
AAATGAATGCAGTTCTCCCGCTGCT 41 119 1268 Antisense
AATACAGCTCCATCTACAAGCCATA 659 171 1330 Antisense
CTATCAACACAACTTCGTCCGTTCA 194 225 1414 Antisense
TCGTCCGTTCAACAGCTTCGAAGAA 176 601 1428 Antisense
AGTCCTCAATCTTCGTCAAATTCTC 371 61 1561 Antisense
Sequence Source Affymetrix Proprietary Database