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[183561_s_at]

Description F40F12.7 /REP_DB=WormBase Gene ID /WP=CE00570 /TR=Q20216 /GB=CAA82938.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 70      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 65      6grp_total > 80      4grp_total > 01      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1722
1 2 3 4 range
A 942
(-2.6)
P 		821.4
(-3)
P 		902.9
(-2.7)
P 		2470.5
(3)
P 		1649
B 1252.4
(-1.8)
P 		935.9
(-3)
P 		1467
(-1)
P 		2523.8
(3)
P 		1588
C 801.9
(-3)
P 		892.5
(-2.4)
P 		1030.5
(-1.6)
P 		1756.8
(3)
P 		955
avr 998.8
(-2.5) 		883.3
(-3) 		1133.5
(-1.9) 		2250.4
(3) 		1367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 972
1 2 3 4 5 6 range
A 1292.5
(0.2)
P 		1008.9
(-1.6)
P 		1308.6
(0.3)
P 		1726.7
(3)
P 		789.8
(-3)
P 		874.7
(-2.5)
P 		937
B 878.7
(-1.7)
P 		960
(-0.7)
P 		764.9
(-3)
P 		988.9
(-0.4)
P 		1273
(3)
P 		997.1
(-0.3)
P 		508
C 754.9
(-3)
P 		1171.9
(0.2)
P 		849.8
(-2.3)
P 		1538.6
(3)
P 		908.8
(-1.8)
P 		1096.9
(-0.4)
P 		784
avr 975.4
(-3) 		1046.9
(-2) 		974.4
(-3) 		1418.1
(3) 		990.5
(-2.8) 		989.6
(-2.8) 		444
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 343
(2.4)
P 		178.3
(-3)
P 		236
(-1.1)
P 		361.6
(3)
P 		183
B 399.4
(0.3)
P 		231.2
(-3)
P 		339.9
(-0.9)
P 		537.8
(3)
P 		307
C 265.5
(-2.5)
P 		256.6
(-3)
P 		359.2
(3)
P 		296.2
(-0.7)
P 		103
avr 336
(0.9) 		222
(-3) 		311.7
(0) 		398.5
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 238.3
(-2.3)
P 		358.8
(0.9)
P 		285
(-1.1)
P 		437.9
(3)
P 		238.3
(-2.3)
P 		213
(-3)
P 		225
B 305.7
(-0.8)
P 		319.5
(-0.6)
P 		185.7
(-3)
P 		261.9
(-1.6)
P 		517.2
(3)
P 		371.8
(0.4)
P 		332
C 279.8
(-0.5)
P 		357.6
(2.6)
P 		216.3
(-3)
P 		309.4
(0.7)
P 		294.1
(0.1)
P 		367.2
(3)
P 		151
avr 274.6
(-0.7) 		345.3
(2.8) 		229
(-3) 		336.4
(2.3) 		349.9
(3) 		317.3
(1.4) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183561_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6718
Sequence Type Exemplar sequence
Representative Public ID F40F12.7 NCBI
Target Description F40F12.7 /REP_DB=WormBase Gene ID /WP=CE00570 /TR=Q20216 /GB=CAA82938.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066796 NCBI Caenorhabditis elegans F40F12.7 (F40F12.7) mRNA, complete cds. 11/11 None
SNAP00000010927 ENSEMBL cdna:SNAP chromosome:CEL140:III:9914522:9915398:1 10/11 None
GENEFINDER00000010931 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9914522:9915398:1 11/11 None
F40F12.7.1 ENSEMBL cdna:known chromosome:CEL140:III:9914432:9915669:1 gene:F40F12.7 11/11 None
F40F12.7.2 ENSEMBL cdna:known chromosome:CEL140:III:9914522:9915645:1 gene:F40F12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066800 1/11 Cross Hyb Matching Probes A 
K03H1.10.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9914517-9915394(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F12.7
Entrez Gene 176402 Entrez gene
SwissProt Q7JMS5 EMBL-EBI
WormBase CE00570 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3712 transcription cofactor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82938 Hypothetical protein F40F12.7 [Caenorhabditis elegans] ref|NP_499197.1| F40F12.7 [Caenorhabditis elegans] pir||S42836 F40F12.7 protein - Caenorhabditis elegans 1.0E-106
blast CAA82938 Hypothetical protein F40F12.7 [Caenorhabditis elegans] ref|NP_499197.1| F40F12.7 [Caenorhabditis elegans] pir||S42836 F40F12.7 protein - Caenorhabditis elegans 5.0E-75
blast CAA82353 Hypothetical protein R10E11.1a [Caenorhabditis elegans] ref|NP_499161.1| R10E11.1a [Caenorhabditis elegans] 7.0E-69
blast CAA82665 Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] ref|NP_499201.1| K03H1.10 [Caenorhabditis elegans] 4.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000197 EMBL-EBI TAZ finger 1.2E-29
Pfam IPR000197 EMBL-EBI TAZ finger 1.8E-49
Sequence
Target Sequence 
>C. ELEGANS:183561_S_AT
ttcagcaacaatttgttcttttactccatgcacacaaatgttctcaacgtgagaaggaaa
ataatgagtttgctgccaggaatcaactacttccacatgctgcatgtacattaccccatt
gctcaactatgaaggaagtattgattcacatgacaaactgcaatgttggtcgtttatgtc
atttcgctcattgtgcatcgtctcgccaaataatagctcactggaaagactgctcgaggg
aagattgcccggtctgcaaaccactcaaagggatacaagatactccattacaattttcat
tgcccgatgtgatcagtctgataggcgccaacggaaattcttatggaagtgcagatggtg
aagtaattcatcaaattggatcttcggcaatgtcagttggtgaaggtggacatcagtcaa
gaaccaaccaagaaactgagacaaataggcaaaatcaaagccaacaaccattaatggata
tcaatgttcagttgaatgctgaagaactcgaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGCAACAATTTGTTCTTTTACT 547 687 53 Antisense
CTGCCAGGAATCAACTACTTCCACA 245 237 125 Antisense
AGGAATCAACTACTTCCACATGCTG 116 55 130 Antisense
TCGAGGGAAGATTGCCCGGTCTGCA 284 603 286 Antisense
GCCCGATGTGATCAGTCTGATAGGC 648 285 354 Antisense
GATCAGTCTGATAGGCGCCAACGGA 446 419 363 Antisense
ATAGGCGCCAACGGAAATTCTTATG 114 21 373 Antisense
AAGTAATTCATCAAATTGGATCTTC 578 157 413 Antisense
GGATCTTCGGCAATGTCAGTTGGTG 228 511 430 Antisense
GGCAATGTCAGTTGGTGAAGGTGGA 328 533 438 Antisense
GTTGAATGCTGAAGAACTCGAATTG 478 437 543 Antisense
Sequence Source Affymetrix Proprietary Database