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[183560_at]

Description C07G3.7 /REP_DB=WormBase Gene ID /WP=CE07998 /TR=O16320 /GB=AAB65379.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 09      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 1.9
(-3)
A 		2
(-2.9)
A 		6.1
(3)
A 		4.8
(1.1)
A 		4
B 2.6
(3)
A 		2.2
(-3)
A 		2.3
(-1.5)
A 		2.5
(1.5)
A 		0
C 1.8
(-2.9)
A 		4
(-2.5)
A 		1.3
(-3)
A 		32.6
(3)
A 		31
avr 2.1
(-3) 		2.7
(-2.7) 		3.2
(-2.4) 		13.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.7
(0.5)
A 		2.5
(-0.2)
A 		2
(-1.7)
A 		1.6
(-3)
A 		2.4
(-0.5)
A 		3.5
(3)
A 		2
B 9.8
(3)
A 		3.6
(-1.3)
A 		1.5
(-2.8)
A 		2.6
(-2)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		9
C 1.7
(0.6)
A 		1.8
(1)
A 		2.3
(3)
A 		1.9
(1.4)
A 		1
(-2.2)
A 		0.8
(-3)
A 		2
avr 4.7
(3) 		2.6
(-1.1) 		1.9
(-2.4) 		2
(-2.2) 		1.6
(-3) 		1.8
(-2.6) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.7
(-1.5)
A 		0.4
(-3)
A 		1.6
(3)
A 		0.7
(-1.5)
A 		1
B 0.8
(3)
A 		0.6
(-1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0
C 0.6
(-2.8)
A 		1.2
(-2.1)
A 		0.4
(-3)
A 		5.5
(3)
A 		5
avr 0.7
(-3) 		0.7
(-3) 		0.8
(-2.6) 		2.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.5
(-1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.7
(0.6)
A 		0.9
(3)
A 		1
B 3.4
(3)
A 		1.2
(-1.4)
A 		0.4
(-3)
A 		0.7
(-2.4)
A 		0.5
(-2.8)
A 		0.5
(-2.8)
A 		3
C 0.6
(3)
A 		0.5
(1)
A 		0.6
(3)
A 		0.4
(-1)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0
avr 1.5
(3) 		0.9
(-0.6) 		0.5
(-3) 		0.5
(-3) 		0.5
(-3) 		0.6
(-2.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15639
Sequence Type Exemplar sequence
Representative Public ID C07G3.7 NCBI
Target Description C07G3.7 /REP_DB=WormBase Gene ID /WP=CE07998 /TR=O16320 /GB=AAB65379.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000037806 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3491189:3492424:-1 11/11 None
C07G3.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3491189:3492424:-1 gene:C07G3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037793 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3491188-3492506(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07G3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T31752 hypothetical protein C07G3.7 - Caenorhabditis elegans 1.0E-127
blast AAW88416 Serpentine receptor, class bc (class b-like) protein 36 [Caenorhabditis elegans] ref|NP_001021358.1| Serpentine Receptor, class BC (class B-like) family member (srbc-36) [Caenorhabditis elegans] 1.0E-103
blast NP_001021359 Serpentine Receptor, class BC (class B-like) family member (srbc-36) [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.3E-123
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000037806 7 4-26,43-65,80-102,123-145,178-197,217-239,254-273
Sequence
Target Sequence 
>C. ELEGANS:183560_AT
gaaagattcttcgcggcatacttcccaattctctatcatcagaaacggagcagggtgctg
aactggccagtttccttaataggtgtgtgcttcgggttgtccgaagagtttctgctattt
ggtttttgttcatataatatggaaattccaccaacctgtcgagttttcgggtgtgcaatg
aacaagtgcttctacaacttttggactattcatcggagtgtaatattttcactcataata
tcattttccatcttgctctcaacacgattatttatctggaatgtagtgaaacataagaac
actaataatcaactttcaaaagcaaatcgtctagctctacttgacacttgcacggtgctc
atatttgattttcttccatctttttgcggcaacatgtggcccattgcaccaatgttttcg
tttgattacatcggaccgtacaacgcagtgttgaaagtaaccggatgcgcaatcgaggca
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGATTCTTCGCGGCATACTTCC 516 359 412 Antisense
TACTTCCCAATTCTCTATCATCAGA 439 645 430 Antisense
GGTGCTGAACTGGCCAGTTTCCTTA 209 501 465 Antisense
AATAGGTGTGTGCTTCGGGTTGTCC 128 169 489 Antisense
GAGTTTCTGCTATTTGGTTTTTGTT 296 399 517 Antisense
CAACCTGTCGAGTTTTCGGGTGTGC 487 185 563 Antisense
TAATATCATTTTCCATCTTGCTCTC 368 635 647 Antisense
GCTCTACTTGACACTTGCACGGTGC 252 299 745 Antisense
TTGCGGCAACATGTGGCCCATTGCA 406 701 795 Antisense
ACATCGGACCGTACAACGCAGTGTT 458 97 839 Antisense
GTAACCGGATGCGCAATCGAGGCAA 139 461 868 Antisense
Sequence Source Affymetrix Proprietary Database