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[183559_s_at] --- /// --- /// ---

Description Y43D4A.4 /REP_DB=WormBase Gene ID /WP=CE21877 /TR=Q9NF27 /GB=CAB60345.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 99      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 71.9
(3)
P 		40.2
(-3)
A 		52.4
(-0.7)
A 		54
(-0.4)
A 		32
B 67.3
(-0.2)
M 		45.9
(-1.8)
A 		29.4
(-3)
A 		111.2
(3)
M 		82
C 56.1
(-2.2)
A 		57.3
(-2.1)
A 		38
(-3)
A 		170.8
(3)
P 		133
avr 65.1
(-0.9) 		47.8
(-2.3) 		39.9
(-3) 		112
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 46.1
(-2.2)
A 		10.4
(-3)
A 		55.8
(-1.9)
P 		41
(-2.3)
P 		263.8
(3)
P 		169.8
(0.8)
P 		253
B 79.5
(-1.7)
P 		83.9
(-1.5)
P 		40.7
(-3)
A 		111.6
(-0.6)
P 		216.2
(3)
P 		181.2
(1.8)
P 		176
C 66.6
(-2.3)
M 		87.4
(-1.6)
P 		43.1
(-3)
A 		91
(-1.5)
P 		209.9
(2.3)
P 		233.2
(3)
P 		190
avr 64.1
(-2.4) 		60.6
(-2.5) 		46.5
(-3) 		81.2
(-1.9) 		230
(3) 		194.7
(1.8) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 26.2
(3)
P 		8.7
(-2.7)
A 		13.7
(-1.1)
A 		7.9
(-3)
A 		18
B 21.5
(2.2)
M 		11.3
(-1.4)
A 		6.8
(-3)
A 		23.7
(3)
M 		17
C 18.6
(-0.9)
A 		16.5
(-1.7)
A 		13.2
(-3)
A 		28.8
(3)
P 		16
avr 22.1
(3) 		12.2
(-2.4) 		11.2
(-3) 		20.1
(1.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 8.5
(-2.6)
A 		3.7
(-3)
A 		12.2
(-2.3)
P 		10.4
(-2.5)
P 		79.6
(3)
P 		41.3
(-0)
P 		76
B 27.6
(-1.6)
P 		27.9
(-1.6)
P 		9.9
(-3)
A 		29.6
(-1.5)
P 		87.9
(3)
P 		67.6
(1.4)
P 		78
C 24.7
(-1.8)
M 		26.7
(-1.6)
P 		11
(-3)
A 		18.3
(-2.3)
P 		67.9
(2.1)
P 		78.1
(3)
P 		67
avr 20.3
(-2.2) 		19.4
(-2.3) 		11
(-3) 		19.4
(-2.3) 		78.5
(3) 		62.3
(1.6) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183559_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9555
Sequence Type Exemplar sequence
Representative Public ID Y43D4A.4 NCBI
Target Description Y43D4A.4 /REP_DB=WormBase Gene ID /WP=CE21877 /TR=Q9NF27 /GB=CAB60345.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070585(11), NM_070586(11), NM_073642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070585 NCBI Caenorhabditis elegans Y43D4A.3 (Y43D4A.3) mRNA, complete cds. 11/11 A 
NM_070586 NCBI Caenorhabditis elegans Y43D4A.4 (Y43D4A.4) mRNA, complete cds. 11/11 A 
NM_073642 NCBI Caenorhabditis elegans C27A7.6 (C27A7.6) mRNA, complete cds. 11/11 A 
SNAP00000037218 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16765652:16770018:1 11/11 None
SNAP00000037219 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16766284:16768279:-1 11/11 None
GENEFINDER00000037222 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16766729:16768279:-1 11/11 None
GENEFINDER00000037227 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16768481:16770035:1 11/11 None
Y43D4A.3 ENSEMBL cdna:known chromosome:CEL140:IV:16766729:16768279:-1 gene:Y43D4A.3 11/11 A 
Y43D4A.4 ENSEMBL cdna:known chromosome:CEL140:IV:16768481:16770035:1 gene:Y43D4A.4 11/11 A 
C27A7.6 ENSEMBL cdna:known chromosome:CEL140:V:12127740:12129898:-1 gene:C27A7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16768486-16770041(+) 100.0 100.0
chrIV:16766272-16767827(-) 100.0 100.0
chrV:12128232-12129439(-) 94.88 94.88
Public Domain and Genome References
Gene Title


Ensembl Y43D4A.3
Y43D4A.4
C27A7.6
Entrez Gene 182951 Entrez gene
189852 Entrez gene
189853 Entrez gene
SwissProt O01932 EMBL-EBI
Q9NF28 EMBL-EBI
Q9NF27 EMBL-EBI
WormBase CE08409 Wormbase
CE21876 Wormbase
CE21877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07317 Hypothetical protein C27A7.6 [Caenorhabditis elegans] emb|CAB02792.1| Hypothetical protein C27A7.6 [Caenorhabditis elegans] ref|NP_506043.1| C27A7.6 [Caenorhabditis elegans] 0.0
blast CAE75399 Hypothetical protein CBG23388 [Caenorhabditis briggsae] 0.0
blast CAB60344 Hypothetical protein Y43D4A.3 [Caenorhabditis elegans] ref|NP_502986.1| Y43D4A.3 [Caenorhabditis elegans] 1.0E-165
blast CAB07317 Hypothetical protein C27A7.6 [Caenorhabditis elegans] emb|CAB02792.1| Hypothetical protein C27A7.6 [Caenorhabditis elegans] ref|NP_506043.1| C27A7.6 [Caenorhabditis elegans] 1.0E-146
blast CAB60344 Hypothetical protein Y43D4A.3 [Caenorhabditis elegans] ref|NP_502986.1| Y43D4A.3 [Caenorhabditis elegans] 1.0E-143
blast CAB07317 Hypothetical protein C27A7.6 [Caenorhabditis elegans] emb|CAB02792.1| Hypothetical protein C27A7.6 [Caenorhabditis elegans] ref|NP_506043.1| C27A7.6 [Caenorhabditis elegans] 1.0E-137
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502986.1 6 37-59,74-96,142-164,174-196,227-249,264-286
NP_502987.1 6 13-35,45-67,80-102,112-134,166-188,203-225
NP_506043.1 12 34-56,76-98,110-132,142-164,177-199,209-231,263-285,300-319,332-351,361-383,396-418,433-452
Y43D4A.3 6 37-59,74-96,142-164,174-196,227-249,264-286
Y43D4A.4 6 13-35,45-67,80-102,112-134,166-188,203-225
C27A7.6 12 34-56,76-98,110-132,142-164,177-199,209-231,263-285,300-319,332-351,361-383,396-418,433-452
SNAP00000037218 6 59-81,91-108,128-150,160-182,213-235,250-272
SNAP00000037219 6 37-59,74-96,142-164,174-196,227-249,264-286
GENEFINDER00000037222 6 37-59,74-96,142-164,174-196,227-249,264-286
GENEFINDER00000037227 6 13-35,45-67,80-102,112-134,166-188,203-225
Sequence
Target Sequence 
>C. ELEGANS:183559_S_AT
aaattgctgaatgctggttccctggtgatcagagagcaattgcaaatgtactttcttttg
ttgcaaatcctgccggtgttgccctgggaacaattgtgccatccattctttttggtcaca
ataagactattgattcgaatagttggatgttcttcacatttactcttggaatggaatgtc
tagccttgtttccatttgttctagcactattcgttcgaactaaactgccacccactccac
catcagcttcttctgctgctcatcagaacaacattggtttctttaaatctatccttcaat
gtatttttaatgctcaatttttcatccaaatgactctctttgcatttgcgttttcgcttc
tgtggagtctaatgatttttctcgatggtccactcaaagatcaaggttatgagatggctg
gatatccaactgccgtgtgtgcaatcgttggcacgttaacatcactgctcgctggtcata
ttgccgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGCTGAATGCTGGTTCCCTGG 556 115 206 Antisense
TGTTGCAAATCCTGCCGGTGTTGCC 528 557 264 Antisense
GTGCCATCCATTCTTTTTGGTCACA 566 477 301 Antisense
CCATTTGTTCTAGCACTATTCGTTC 692 269 397 Antisense
TATTCGTTCGAACTAAACTGCCACC 514 663 413 Antisense
GACTCTCTTTGCATTTGCGTTTTCG 634 373 537 Antisense
CGTTTTCGCTTCTGTGGAGTCTAAT 188 247 554 Antisense
GATGGCTGGATATCCAACTGCCGTG 233 407 618 Antisense
AACTGCCGTGTGTGCAATCGTTGGC 144 139 633 Antisense
TTGGCACGTTAACATCACTGCTCGC 272 705 653 Antisense
TGCTCGCTGGTCATATTGCCGACAA 548 581 671 Antisense
Sequence Source Affymetrix Proprietary Database