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[183558_at]

Description B0047.3 /REP_DB=WormBase Gene ID /WP=CE07675 /TR=O16566 /GB=AAB66043.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 10      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 42
(-2.8)
P 		58.5
(-2)
A 		38.3
(-3)
A 		154.2
(3)
P 		116
B 47.1
(-3)
P 		56.4
(-2.3)
M 		68
(-1.3)
P 		121.9
(3)
P 		75
C 34.2
(-3)
A 		65.5
(-1.9)
A 		41.3
(-2.7)
A 		197.7
(3)
P 		164
avr 41.1
(-3) 		60.1
(-2) 		49.2
(-2.6) 		157.9
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 34.9
(-3)
A 		43
(-2.7)
A 		122.2
(0.6)
P 		85.2
(-0.9)
P 		110.7
(0.1)
P 		182.1
(3)
P 		147
B 24.5
(-3)
A 		46.8
(-1.9)
A 		72.1
(-0.7)
P 		100
(0.7)
P 		148.4
(3)
P 		140.5
(2.6)
P 		124
C 60
(-2.1)
M 		55.5
(-2.4)
P 		43
(-3)
A 		85.6
(-0.8)
M 		123.3
(1.1)
P 		159.8
(3)
P 		117
avr 39.8
(-3) 		48.4
(-2.6) 		79.1
(-1.1) 		90.3
(-0.5) 		127.5
(1.3) 		160.8
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 15.3
(-0.5)
P 		12.7
(-1.7)
A 		10
(-3)
A 		22.6
(3)
P 		13
B 15
(-2.5)
P 		13.9
(-3)
M 		15.8
(-2.1)
P 		26
(3)
P 		12
C 11.3
(-3)
A 		18.8
(-1)
A 		14.4
(-2.2)
A 		33.3
(3)
P 		22
avr 13.9
(-2.8) 		15.1
(-2.3) 		13.4
(-3) 		27.3
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 6.4
(-3)
A 		15.3
(-1.6)
A 		26.6
(0.2)
P 		21.6
(-0.6)
P 		33.4
(1.3)
P 		44.3
(3)
P 		38
B 8.5
(-3)
A 		15.6
(-2.2)
A 		17.5
(-2)
P 		26.5
(-0.9)
P 		60.3
(3)
P 		52.4
(2.1)
P 		52
C 22.2
(-1.4)
M 		16.9
(-2.2)
P 		10.9
(-3)
A 		17.2
(-2.1)
M 		39.9
(1.1)
P 		53.5
(3)
P 		43
avr 12.4
(-3) 		15.9
(-2.4) 		18.3
(-2.1) 		21.8
(-1.5) 		44.5
(2.1) 		50.1
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4053
Sequence Type Exemplar sequence
Representative Public ID B0047.3 NCBI
Target Description B0047.3 /REP_DB=WormBase Gene ID /WP=CE07675 /TR=O16566 /GB=AAB66043.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061762 NCBI Caenorhabditis elegans B0047.3 (B0047.3) mRNA, complete cds. 11/11 None
SNAP00000006978 ENSEMBL cdna:SNAP chromosome:CEL140:II:2044703:2046657:-1 11/11 None
GENEFINDER00000006981 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2044703:2045586:-1 11/11 None
B0047.3 ENSEMBL cdna:known chromosome:CEL140:II:2044703:2045586:-1 gene:B0047.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2044701-2045585(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-24
Ensembl B0047.3
Entrez Gene 181826 Entrez gene
SwissProt O16566 EMBL-EBI
WormBase CE07675 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66043 Hypothetical protein B0047.3 [Caenorhabditis elegans] ref|NP_494163.1| B0047.3 [Caenorhabditis elegans] 1.0E-132
blast AAB66044 Hypothetical protein B0047.4 [Caenorhabditis elegans] ref|NP_494164.1| B0047.4 [Caenorhabditis elegans] 3.0E-91
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 5.0E-68
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 1.0E-67
blast AAA27946 Hypothetical protein C08C3.2 [Caenorhabditis elegans] 3.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 8.3E-40
Pfam IPR002083 EMBL-EBI MATH 1.4E-11
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.1E-4
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.2E-36
Pfam IPR002083 EMBL-EBI MATH 1.4E-11
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.2E-36
Sequence
Target Sequence 
>C. ELEGANS:183558_AT
gatgactacctaatcggtgacactatcaccattgaagcaactgtcaggatcacagatatg
actggattttcgaaaaaagtgctcaaaagcttcgatgaatcaaatgaggaattttccgat
gtggttgttgcagttggaaacgagaaattttacgttctgaaagtgtatctggcttctcat
tctacgtatttcaagactctttttctcggaaaattcgtcgaagctgacaaatctgaagtc
acacttcaagatatcgaccccactgattttcagtgccttatggaggttattcacggagaa
tctgcgattgatgattctaccatcgatggagttcttcaactggcccaaatgttcgatgtt
tccttggcaattcgaaaatccgaggaatttttggtggaaaaatcgaagaaatcgatgaga
gatttgcttaaactcgcaaaacaatttcagctggagaatttgaaaaccgtttgcctctca
aaaatcaatacgttggatgagattgaagcatcgatggctcataatcctgcagaaatggat
ccaagtgtgctggcagaacttctcaaaaaatccaccgctcttgttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGACTACCTAATCGGTGACACTA 614 411 121 Antisense
GACACTATCACCATTGAAGCAACTG 285 367 139 Antisense
CGTATTTCAAGACTCTTTTTCTCGG 443 247 305 Antisense
TCACACTTCAAGATATCGACCCCAC 93 629 359 Antisense
TCGACCCCACTGATTTTCAGTGCCT 227 603 374 Antisense
GAGTTCTTCAACTGGCCCAAATGTT 190 399 449 Antisense
AATGTTCGATGTTTCCTTGGCAATT 236 163 468 Antisense
GAATTTGAAAACCGTTTGCCTCTCA 359 325 576 Antisense
GCATCGATGGCTCATAATCCTGCAG 454 309 628 Antisense
AAGTGTGCTGGCAGAACTTCTCAAA 81 159 663 Antisense
TCAAAAAATCCACCGCTCTTGTTCG 45 629 683 Antisense
Sequence Source Affymetrix Proprietary Database