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[183557_at]

Description C05D9.3 /REP_DB=WormBase Gene ID /WP=CE07929 /TR=Q9GYK2 /GB=AAF98605.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 76.4
(-3)
P 		123.1
(3)
M 		84.9
(-1.9)
A 		98.1
(-0.2)
A 		47
B 126.6
(3)
P 		123.3
(2.7)
P 		56.5
(-3)
P 		74.4
(-1.5)
A 		70
C 81.5
(-3)
P 		150.5
(3)
P 		96.5
(-1.7)
P 		125.4
(0.8)
M 		69
avr 94.8
(-1.2) 		132.3
(3) 		79.3
(-3) 		99.3
(-0.7) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 203.6
(3)
M 		72.6
(-2.6)
P 		131
(-0.1)
P 		63.4
(-3)
A 		71
(-2.7)
A 		70.1
(-2.7)
A 		140
B 109
(3)
A 		86.8
(0.1)
A 		63.8
(-3)
P 		77.4
(-1.2)
A 		104.9
(2.5)
P 		69.9
(-2.2)
A 		45
C 118.8
(3)
A 		114.9
(2.6)
A 		74.2
(-1.2)
P 		118.1
(2.9)
A 		54.9
(-3)
A 		70.2
(-1.6)
A 		64
avr 143.8
(3) 		91.4
(-1.3) 		89.7
(-1.4) 		86.3
(-1.7) 		76.9
(-2.4) 		70.1
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 27.8
(3)
P 		26.7
(2.5)
M 		22.2
(0.5)
A 		14.4
(-3)
A 		13
B 40.4
(3)
P 		30.4
(0.8)
P 		13.1
(-3)
P 		15.9
(-2.4)
A 		27
C 27
(-1.4)
P 		43.3
(3)
P 		33.6
(0.4)
P 		21.1
(-3)
M 		22
avr 31.7
(2.3) 		33.5
(3) 		23
(-0.8) 		17.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 37.5
(3)
M 		25.8
(-0.3)
P 		28.5
(0.5)
P 		16.1
(-3)
A 		21.4
(-1.5)
A 		17.1
(-2.7)
A 		21
B 37.9
(2)
A 		28.9
(-0)
A 		15.5
(-3)
P 		20.5
(-1.9)
A 		42.6
(3)
P 		26
(-0.7)
A 		27
C 44
(3)
A 		35
(0.9)
A 		18.9
(-2.7)
P 		23.8
(-1.6)
A 		17.8
(-3)
A 		23.5
(-1.7)
A 		26
avr 39.8
(3) 		29.9
(-0) 		21
(-2.7) 		20.1
(-3) 		27.3
(-0.8) 		22.2
(-2.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183557_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18432
Sequence Type Exemplar sequence
Representative Public ID C05D9.3 NCBI
Target Description C05D9.3 /REP_DB=WormBase Gene ID /WP=CE07929 /TR=Q9GYK2 /GB=AAF98605.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075811(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075811 NCBI Caenorhabditis elegans C05D9.3 (C05D9.3) mRNA, complete cds. 9/11 None
GENEFINDER00000015518 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1111913:1117107:1 9/11 None
C05D9.3 ENSEMBL cdna:known chromosome:CEL140:X:1111900:1116791:1 gene:C05D9.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015511 4/11 Cross Hyb Matching Probes None
SNAP00000015512 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1111912-1116457(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D9.3
Entrez Gene 182254 Entrez gene
SwissProt Q9GYK2 EMBL-EBI
WormBase CE35381 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
7160 cell-matrix adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8305 integrin complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF98605 Hypothetical protein C05D9.3 [Caenorhabditis elegans] ref|NP_508212.3| C05D9.3 [Caenorhabditis elegans] 0.0
blast T31060 hypothetical protein C05D9.3 - Caenorhabditis elegans 1.0E-162
blast CAE60514 Hypothetical protein CBG04133 [Caenorhabditis briggsae] 1.0E-161
blast CAE60514 Hypothetical protein CBG04133 [Caenorhabditis briggsae] 1.0E-159
blast T31060 hypothetical protein C05D9.3 - Caenorhabditis elegans 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR002369 EMBL-EBI Integrin, beta chain 2.3E-7
Sequence
Target Sequence 
>C. ELEGANS:183557_AT
accaagtcgtgccgtgtgcagaataatcaaatcgttgaatttaagattgaagaaatcaat
tctcgattgtgccatcaaaacggacatctcgtctgcggacaatgtgtttgtgatcagtca
cgtggtggggataaatgtgaatgtccgcttgcttcgcatggagtttccaaggcttctgaa
ttggaggacaagtgcagattcaattcatcttccccagtatgcagtgcatctggaaaatgc
aagtgtggacaatgccaatgcaacaaacctactgcggtgttttttttctgggatactttg
catattcaaaattctataacacaggaactgtgctcgaataatgggcggtgtgaatgcaat
cgttgtgtttgtaatatggggaaaactggggccttctgtggatctgacgaaaagacacca
gccccagaggagaaggataagccagaatcggtgccggaggagccagaagccactgaaaaa
ccagacgacatgccgtctgacagtgatcttgagaaggaactggatgagtcatcgagtgcg
aaggaagagcaaacttcctccagtggagttgtgtcgcgagtttgtgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAAGTCGTGCCGTGTGCAGAATA 123 85 508 Antisense
CAAAACGGACATCTCGTCTGCGGAC 560 189 583 Antisense
TAAATGTGAATGTCCGCTTGCTTCG 706 639 639 Antisense
CGCTTGCTTCGCATGGAGTTTCCAA 386 255 653 Antisense
TCTTCCCCAGTATGCAGTGCATCTG 566 617 715 Antisense
TACTGCGGTGTTTTTTTTCTGGGAT 130 645 777 Antisense
AGACACCAGCCCCAGAGGAGAAGGA 295 71 920 Antisense
AATCGGTGCCGGAGGAGCCAGAAGC 465 169 953 Antisense
GACATGCCGTCTGACAGTGATCTTG 454 369 994 Antisense
AAGAGCAAACTTCCTCCAGTGGAGT 496 153 1052 Antisense
GGAGTTGTGTCGCGAGTTTGTGTAT 346 517 1072 Antisense
Sequence Source Affymetrix Proprietary Database