[Home] | [Total List]

[183556_at]

Description C08F11.4 /REP_DB=WormBase Gene ID /WP=CE17382 /TR=O62050 /GB=CAB05675.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 03      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 54.8
(-1.5)
A 		53.9
(-1.7)
A 		45.2
(-3)
A 		84.6
(3)
P 		39
B 61.3
(1.6)
A 		65.1
(2.4)
A 		39
(-3)
A 		68.1
(3)
P 		29
C 39.1
(-1.5)
A 		10.8
(-3)
A 		51.3
(-0.9)
A 		126.6
(3)
P 		116
avr 51.7
(-2) 		43.3
(-3) 		45.2
(-2.8) 		93.1
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 55.1
(-0.7)
A 		41.3
(-2.6)
A 		80.6
(3)
A 		49.5
(-1.5)
A 		63.9
(0.6)
A 		38.8
(-3)
A 		42
B 26.5
(-0.2)
A 		30.3
(0.4)
A 		39.3
(1.7)
A 		41
(1.9)
A 		48.2
(3)
A 		7.6
(-3)
A 		41
C 36.4
(-1.6)
A 		46.4
(-0.2)
P 		70.3
(3)
A 		67.6
(2.6)
A 		59.7
(1.6)
A 		25.8
(-3)
A 		45
avr 39.3
(-0.7) 		39.3
(-0.7) 		63.4
(3) 		52.7
(1.4) 		57.3
(2.1) 		24.1
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 20
(3)
A 		11.7
(-3)
A 		11.8
(-2.9)
A 		12.4
(-2.5)
P 		8
B 19.6
(3)
A 		16.1
(1)
A 		9
(-3)
A 		14.5
(0.1)
P 		11
C 13
(0.3)
A 		3.1
(-3)
A 		17.9
(1.9)
A 		21.3
(3)
P 		18
avr 17.5
(3) 		10.3
(-3) 		12.9
(-0.8) 		16.1
(1.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.2
(-2.5)
A 		14.7
(0.2)
A 		17.6
(2)
A 		12.6
(-1.1)
A 		19.3
(3)
A 		9.4
(-3)
A 		10
B 9.2
(-0.7)
A 		10.1
(-0.4)
A 		9.6
(-0.6)
A 		10.9
(-0.1)
A 		19.6
(3)
A 		2.8
(-3)
A 		17
C 13.5
(-0.3)
A 		14.1
(0.1)
P 		17.9
(2.2)
A 		13.6
(-0.2)
A 		19.3
(3)
A 		8.6
(-3)
A 		11
avr 11
(-1) 		13
(-0.1) 		15
(0.9) 		12.4
(-0.4) 		19.4
(3) 		6.9
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183556_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10018
Sequence Type Exemplar sequence
Representative Public ID C08F11.4 NCBI
Target Description C08F11.4 /REP_DB=WormBase Gene ID /WP=CE17382 /TR=O62050 /GB=CAB05675.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070229 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-21) (sru-21) mRNA, complete cds. 11/11 None
C08F11.4 ENSEMBL cdna:known chromosome:CEL140:IV:13626738:13632666:1 gene:C08F11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042599 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13631513-13632672(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-21
Ensembl C08F11.4
Entrez Gene 182420 Entrez gene
SwissProt O62050 EMBL-EBI
WormBase CE34524 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05675 Hypothetical protein C08F11.4 [Caenorhabditis elegans] ref|NP_502630.2| Serpentine Receptor, class U family member (sru-21) [Caenorhabditis elegans] 1.0E-167
blast CAB04336 Hypothetical protein F36G9.6 [Caenorhabditis elegans] ref|NP_507004.2| Serpentine Receptor, class U family member (sru-23) [Caenorhabditis elegans] 1.0E-137
blast CAB04335 Hypothetical protein F36G9.5 [Caenorhabditis elegans] ref|NP_507005.1| Serpentine Receptor, class U family member (sru-22) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.2E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502630.2 5 23-45,65-87,107-129,150-172,201-223
C08F11.4 5 23-45,65-87,107-129,150-172,201-223
Sequence
Target Sequence 
>C. ELEGANS:183556_AT
ggtggctttgctcaggcttaattcaataatttttccatcgaattatcaaaagattaacgc
tagaattcttgattggctaccgcttatatttatttatccatttttcttcacagttataat
gttcccaggttatggctactgtagtcatattgaatatcctatatttggttcaattatctt
cagagttactggtacaatgttcgggtggacaaataactttttattaatgtttaacacatt
cttctggttttccatttgtctcggtttcaatttggtattaattgtaaaacttataaaatt
caagctctccgtgcctccttcaatgggatccttggcgtcacatagagctgaaatttcatt
gactttgacaactgtttcaatgtcattttcttatcttactaatgggatgattacggtttt
tggccgcctattcaataaccttaccatctacttgattgttattcgtcctttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGCTTTGCTCAGGCTTAATTCA 210 499 204 Antisense
GAATTCTTGATTGGCTACCGCTTAT 254 323 266 Antisense
TATTTATCCATTTTTCTTCACAGTT 112 663 294 Antisense
AATGTTCCCAGGTTATGGCTACTGT 627 161 321 Antisense
TGGTTTTCCATTTGTCTCGGTTTCA 548 549 448 Antisense
TATAAAATTCAAGCTCTCCGTGCCT 41 653 495 Antisense
TGCCTCCTTCAATGGGATCCTTGGC 301 585 515 Antisense
GATCCTTGGCGTCACATAGAGCTGA 550 385 530 Antisense
TACGGTTTTTGGCCGCCTATTCAAT 283 641 615 Antisense
CAATAACCTTACCATCTACTTGATT 415 179 636 Antisense
ACTTGATTGTTATTCGTCCTTTCAC 643 103 653 Antisense
Sequence Source Affymetrix Proprietary Database