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[183555_at]

Description C34H4.3 /REP_DB=WormBase Gene ID /WP=CE27820 /TR=O45142 /GB=AAC04392.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 61      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 331.8
(3)
P 		186.2
(0)
M 		237.3
(1.1)
P 		37.4
(-3)
A 		294
B 299.3
(3)
P 		201.1
(1)
P 		247.8
(2)
P 		2.6
(-3)
A 		297
C 303.4
(2.8)
P 		220.8
(0.9)
P 		310.1
(3)
P 		60.8
(-3)
A 		249
avr 311.5
(3) 		202.7
(0.7) 		265.1
(2) 		33.6
(-3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 261.3
(3)
P 		107.1
(-3)
A 		127.1
(-2.2)
M 		148.9
(-1.4)
P 		113.9
(-2.7)
P 		145.3
(-1.5)
A 		154
B 226.6
(3)
P 		90.7
(-3)
A 		181.9
(1)
P 		175.7
(0.8)
P 		180.3
(1)
P 		143.2
(-0.7)
P 		136
C 225.6
(3)
P 		106
(-1.9)
A 		79.7
(-3)
A 		166.4
(0.6)
A 		116.6
(-1.5)
A 		189.4
(1.5)
P 		146
avr 237.8
(3) 		101.3
(-3) 		129.6
(-1.8) 		163.7
(-0.3) 		136.9
(-1.4) 		159.3
(-0.5) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 120.8
(3)
P 		40.4
(-1.2)
M 		62
(-0.1)
P 		5.5
(-3)
A 		115
B 95.4
(3)
P 		49.7
(0.1)
P 		57.4
(0.6)
P 		0.6
(-3)
A 		95
C 100.4
(2.5)
P 		63.5
(0.3)
P 		108.1
(3)
P 		10.3
(-3)
A 		98
avr 105.5
(3) 		51.2
(-0.3) 		75.8
(1.2) 		5.5
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 48.2
(3)
P 		38.1
(0)
A 		27.7
(-3)
M 		37.8
(-0)
P 		34.4
(-1)
P 		35.4
(-0.7)
A 		21
B 78.9
(3)
P 		30.2
(-3)
A 		44.2
(-1.3)
P 		46.5
(-1)
P 		73.3
(2.3)
P 		53.4
(-0.1)
P 		49
C 83.6
(3)
P 		32.3
(-1.9)
A 		20.3
(-3)
A 		33.5
(-1.7)
A 		37.7
(-1.4)
A 		63.4
(1.1)
P 		63
avr 70.2
(3) 		33.5
(-2.6) 		30.7
(-3) 		39.3
(-1.7) 		48.5
(-0.3) 		50.7
(0) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10948
Sequence Type Exemplar sequence
Representative Public ID C34H4.3 NCBI
Target Description C34H4.3 /REP_DB=WormBase Gene ID /WP=CE27820 /TR=O45142 /GB=AAC04392.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067694(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067694 NCBI Caenorhabditis elegans C34H4.3 (C34H4.3) mRNA, complete cds. 11/11 None
SNAP00000036196 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1550945:1552934:1 11/11 None
GENEFINDER00000036200 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1550945:1552934:1 11/11 None
C34H4.3 ENSEMBL cdna:known chromosome:CEL140:IV:1550927:1553013:1 gene:C34H4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1550950-1552940(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34H4.3
Entrez Gene 176962 Entrez gene
SwissProt O45142 EMBL-EBI
WormBase CE27820 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04392 Hypothetical protein C34H4.3 [Caenorhabditis elegans] ref|NP_500095.1| C34H4.3 [Caenorhabditis elegans] 0.0
blast CAE61336 Hypothetical protein CBG05174 [Caenorhabditis briggsae] 4.0E-83
blast CAE61336 Hypothetical protein CBG05174 [Caenorhabditis briggsae] 2.0E-81
blast NP_499969 K11H12.4 [Caenorhabditis elegans] gb|AAC24399.1| Hypothetical protein K11H12.4 [Caenorhabditis elegans] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 5.8E-101
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 2.2E-64
Sequence
Target Sequence 
>C. ELEGANS:183555_AT
gagtgtttttcgcacatgttgagccaattcaagtaaaccttccatattggtacattactg
ccgatggtccattcaacatttatttggataacatttatataaacttgaacatacacaaca
cgacttccgtcaacacaaccggcgcttttgtgctcacaggagtttggcagaacccatttg
tgaactttatgactgacccgacaagaggtggaactacgggactactactaacaacagact
tggaaagcgatgcgactattcttttctctcgaccccaatcaaactttgatctaaattttg
gaaaaaccaatagaatggtacacggacagcttttaacagatgccatgttcaacacacttc
aaattaactcaacagcgttgtatccaggagcaatgtactgtcagtattttgtgttcaccg
gagatctactaccagttacttcaagcgttgcaacaaatccaccaaatccgcaaaccaccc
caccagtaatcactactacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGTTTTTCGCACATGTTGAGCC 579 399 743 Antisense
GTACATTACTGCCGATGGTCCATTC 454 459 792 Antisense
CAACACAACCGGCGCTTTTGTGCTC 267 189 873 Antisense
GTGAACTTTATGACTGACCCGACAA 112 483 922 Antisense
GAGGTGGAACTACGGGACTACTACT 147 401 947 Antisense
CGATGCGACTATTCTTTTCTCTCGA 290 249 990 Antisense
CTCTCGACCCCAATCAAACTTTGAT 544 231 1008 Antisense
GAATGGTACACGGACAGCTTTTAAC 343 333 1055 Antisense
ACTGTCAGTATTTTGTGTTCACCGG 299 97 1139 Antisense
GTTCACCGGAGATCTACTACCAGTT 91 443 1155 Antisense
ACCCCACCAGTAATCACTACTACTA 339 89 1219 Antisense
Sequence Source Affymetrix Proprietary Database