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[183554_at]

Description R05A10.6 /REP_DB=WormBase Gene ID /WP=CE16292 /TR=O45703 /GB=CAB05267.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 37.6
(-3)
P 		167.8
(3)
P 		134.5
(1.5)
P 		94.8
(-0.4)
A 		130
B 34
(-3)
A 		208.2
(3)
P 		159.6
(1.3)
P 		63.6
(-2)
A 		174
C 29.9
(-3)
A 		201.7
(3)
P 		172.1
(2)
P 		121
(0.2)
M 		172
avr 33.8
(-3) 		192.6
(3) 		155.4
(1.6) 		93.1
(-0.8) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 62.3
(-2.7)
P 		199.2
(3)
P 		108.1
(-0.8)
P 		78.7
(-2)
A 		66.3
(-2.6)
A 		55.8
(-3)
A 		143
B 70.8
(-1.4)
P 		132.3
(3)
P 		100.8
(0.7)
P 		48.7
(-3)
A 		55.5
(-2.5)
A 		53.2
(-2.7)
A 		84
C 76.7
(-1.1)
P 		144.4
(3)
P 		108.1
(0.8)
A 		54.4
(-2.4)
A 		44.5
(-3)
M 		47.1
(-2.8)
A 		100
avr 69.9
(-2) 		158.6
(3) 		105.7
(0) 		60.6
(-2.5) 		55.4
(-2.8) 		52
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 13.7
(-3)
P 		36.4
(3)
P 		35.2
(2.7)
P 		13.9
(-2.9)
A 		23
B 10.8
(-3)
A 		51.4
(3)
P 		37
(0.9)
P 		13.6
(-2.6)
A 		41
C 9.9
(-3)
A 		58
(2.8)
P 		60
(3)
P 		20.4
(-1.7)
M 		50
avr 11.5
(-3) 		48.6
(3) 		44.1
(2.3) 		16
(-2.3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 11.5
(-3)
P 		70.8
(3)
P 		23.5
(-1.8)
P 		20
(-2.1)
A 		20
(-2.1)
A 		13.6
(-2.8)
A 		59
B 24.6
(-0.7)
P 		44
(3)
P 		24.5
(-0.8)
P 		12.9
(-3)
A 		22.6
(-1.1)
A 		19.9
(-1.6)
A 		31
C 28.4
(0.2)
P 		44.1
(3)
P 		27.5
(0)
A 		10.9
(-3)
A 		14.4
(-2.4)
M 		15.8
(-2.1)
A 		33
avr 21.5
(-1.9) 		53
(3) 		25.2
(-1.3) 		14.6
(-3) 		19
(-2.3) 		16.4
(-2.7) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9852
Sequence Type Exemplar sequence
Representative Public ID R05A10.6 NCBI
Target Description R05A10.6 /REP_DB=WormBase Gene ID /WP=CE16292 /TR=O45703 /GB=CAB05267.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070315 NCBI Caenorhabditis elegans R05A10.6 (R05A10.6) mRNA, complete cds. 11/11 None
SNAP00000012474 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14165765:14168372:1 11/11 None
GENEFINDER00000012482 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14165765:14173077:1 9/11 None
R05A10.6 ENSEMBL cdna:known chromosome:CEL140:IV:14165765:14168456:1 gene:R05A10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14165770-14168378(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05A10.6
Entrez Gene 178370 Entrez gene
SwissProt O45703 EMBL-EBI
WormBase CE36187 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05267 Hypothetical protein R05A10.6 [Caenorhabditis elegans] ref|NP_502716.2| R05A10.6 [Caenorhabditis elegans] 0.0
blast CAB05266 Hypothetical protein R05A10.5 [Caenorhabditis elegans] ref|NP_502717.1| R05A10.5 [Caenorhabditis elegans] 1.0E-167
blast CAB54373 Hypothetical protein Y105C5B.25 [Caenorhabditis elegans] ref|NP_502914.1| Y105C5B.25 [Caenorhabditis elegans] 1.0E-148
blast CAB54373 Hypothetical protein Y105C5B.25 [Caenorhabditis elegans] ref|NP_502914.1| Y105C5B.25 [Caenorhabditis elegans] 1.0E-129
blast CAB54373 Hypothetical protein Y105C5B.25 [Caenorhabditis elegans] ref|NP_502914.1| Y105C5B.25 [Caenorhabditis elegans] 1.0E-122
blast CAE62336 Hypothetical protein CBG06409 [Caenorhabditis briggsae] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 8.1E-123
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 7.7E-29
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-70
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.4E-109
Pfam IPR009981 EMBL-EBI Protein of unknown function DUF1505 2.4E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502716.2 1 5-27
R05A10.6 1 5-27
SNAP00000012474 1 5-27
GENEFINDER00000012482 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:183554_AT
tcaggactgtcaccttcgaagcaaatatttttcaaaatggacagccgtaatagatttgga
tgagagaatgacaacatttggacagagaatgattgatcttctacgatcaattcaagatcc
ttctatcggagttcttgatgtaccacatgtgcatgtgattcaaaatgatgattttcccgc
gaagtttgaaaatcgaacacaactggagaaagaactgatattcaaaaaatacaataaaac
aacgagcaatcagattacaggttctaagttcatcataagaccagataagattggtgtaat
gttaatccacgagatagttggtatgtggccaggaatcaaattgcaaaagttggataaagc
tcaagcagttctcagacactaccgcagcaccaaaaaccggatgtatcaaccgaattggaa
cgaaattccagataaatttggcgtaatgccaattttcaaaagcgtgccacttccagaaca
attttccaaagatttggaagaagcagttgtccaaagagttctgcgagtgtatgattcagt
tcccgtgaattgttccagcatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGGACTGTCACCTTCGAAGCAAA 17 623 693 Antisense
AAGATCCTTCTATCGGAGTTCTTGA 502 153 806 Antisense
GAGTTCTTGATGTACCACATGTGCA 156 399 821 Antisense
ATGATGATTTTCCCGCGAAGTTTGA 105 47 857 Antisense
TCAAGCAGTTCTCAGACACTACCGC 471 631 1053 Antisense
ACACTACCGCAGCACCAAAAACCGG 503 105 1068 Antisense
GCCAATTTTCAAAAGCGTGCCACTT 382 277 1140 Antisense
GTGCCACTTCCAGAACAATTTTCCA 648 477 1156 Antisense
TTGTCCAAAGAGTTCTGCGAGTGTA 454 707 1199 Antisense
GCGAGTGTATGATTCAGTTCCCGTG 561 289 1215 Antisense
GTTCCCGTGAATTGTTCCAGCATAC 692 441 1231 Antisense
Sequence Source Affymetrix Proprietary Database