[Home] | [Total List]

[183553_s_at]

Description F42G9.6 /REP_DB=WormBase Gene ID /WP=CE01305 /TR=Q20353 /GB=AAA91357.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      6grp_highest_nonorm > 81      6grp_total > 36      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 368.6
(3)
P 		215.1
(-2.1)
M 		190
(-2.9)
P 		188.3
(-3)
M 		180
B 229.5
(2.9)
P 		204
(0.6)
A 		163.6
(-3)
P 		230.1
(3)
P 		67
C 301.5
(3)
P 		236.9
(-0.9)
A 		208.8
(-2.6)
P 		201.5
(-3)
P 		100
avr 299.9
(3) 		218.7
(-1.3) 		187.5
(-3) 		206.6
(-2) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 312.3
(3)
P 		280.6
(1.2)
P 		204.2
(-3)
P 		214.6
(-2.4)
P 		240.7
(-1)
P 		211.9
(-2.6)
P 		108
B 282.2
(1.3)
P 		316.6
(3)
P 		234.1
(-1)
P 		241.5
(-0.6)
P 		192.2
(-3)
P 		296
(2)
P 		124
C 272.6
(0.6)
P 		292.4
(1.6)
P 		211.6
(-2.6)
P 		204.6
(-3)
P 		220.3
(-2.2)
P 		319.2
(3)
P 		115
avr 289
(2.4) 		296.5
(3) 		216.6
(-3) 		220.2
(-2.7) 		217.7
(-2.9) 		275.7
(1.4) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 134.2
(3)
P 		46.7
(-1.9)
M 		49.7
(-1.8)
P 		27.6
(-3)
M 		107
B 73.2
(3)
P 		50.4
(-0.9)
A 		37.9
(-3)
P 		49
(-1.1)
P 		35
C 99.8
(3)
P 		68.1
(0.1)
A 		72.8
(0.5)
P 		34
(-3)
P 		66
avr 102.4
(3) 		55.1
(-1.3) 		53.5
(-1.5) 		36.9
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 57.6
(-1.6)
P 		99.8
(3)
P 		44.5
(-3)
P 		54.4
(-1.9)
P 		72.6
(0)
P 		51.6
(-2.2)
P 		55
B 98.2
(1.6)
P 		105.4
(2.4)
P 		56.8
(-3)
P 		64
(-2.2)
P 		78.1
(-0.6)
P 		110.4
(3)
P 		54
C 101
(2.5)
P 		89.2
(1.4)
P 		53.9
(-1.8)
P 		41.2
(-3)
P 		71.3
(-0.3)
P 		106.9
(3)
P 		66
avr 85.6
(1.4) 		98.1
(3) 		51.7
(-3) 		53.2
(-2.8) 		74
(-0.1) 		89.6
(1.9) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183553_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8190
Sequence Type Exemplar sequence
Representative Public ID F42G9.6 NCBI
Target Description F42G9.6 /REP_DB=WormBase Gene ID /WP=CE01305 /TR=Q20353 /GB=AAA91357.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171860(11), NM_001027404(11), NM_171074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171860 NCBI Caenorhabditis elegans F42G9.6b (F42G9.6) mRNA, complete cds. 11/11 None
NM_001027404 NCBI Caenorhabditis elegans F42G9.6c (F42G9.6) mRNA, complete cds. 11/11 None
NM_171074 NCBI Caenorhabditis elegans F42G9.6a (F42G9.6) mRNA, complete cds. 11/11 None
SNAP00000038499 ENSEMBL cdna:SNAP chromosome:CEL140:III:778677:783290:-1 11/11 None
GENEFINDER00000038505 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:778677:783290:-1 11/11 None
F42G9.6b ENSEMBL cdna:known chromosome:CEL140:III:778213:783298:-1 gene:F42G9.6 11/11 None
F42G9.6c ENSEMBL cdna:known chromosome:CEL140:III:778677:783290:-1 gene:F42G9.6 11/11 None
F42G9.6a ENSEMBL cdna:known chromosome:CEL140:III:778677:783290:-1 gene:F42G9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171073 1/11 Cross Hyb Matching Probes None
F42G9.5b.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:778676-783290(-) 100.0 100.0
Public Domain and Genome References
Ensembl F42G9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM29695 Hypothetical protein F42G9.6b [Caenorhabditis elegans] ref|NP_741085.1| F42G9.6b [Caenorhabditis elegans] 0.0
blast AAM29694 Hypothetical protein F42G9.6a [Caenorhabditis elegans] ref|NP_741084.1| F42G9.6a [Caenorhabditis elegans] 0.0
blast AAU05571 Hypothetical protein F42G9.6c [Caenorhabditis elegans] ref|NP_001022575.1| F42G9.6c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.4E-18
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.4E-18
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.4E-18
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.4E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741085.1 5 30-47,57-79,95-117,132-154,250-267
NP_001022575.1 4 26-48,55-77,97-119,139-161
NP_741084.1 5 30-47,57-79,95-117,132-154,250-267
F42G9.6b 5 30-47,57-79,95-117,132-154,250-267
F42G9.6c 4 26-48,55-77,97-119,139-161
F42G9.6a 5 30-47,57-79,95-117,132-154,250-267
SNAP00000038499 5 30-47,57-79,95-117,132-154,250-267
GENEFINDER00000038505 5 30-47,57-79,95-117,132-154,274-291
Sequence
Target Sequence 
>C. ELEGANS:183553_S_AT
tttgcaccgcccggatgtgtgatcagcgagtttggacaggacgaaatggagaaatatgtg
atgagcgttgtttcgggagacgatatcgtatcgcgaatgtcatttcaaagtctacatcga
ctcagggaacgcgtttttcaagagcttcttgcttgtcaacgagctaaatatgagattctg
atacgtggcgtttatcagctttttttcaaatatccgtggggagacgagctttcaggtgtg
ccacgtatttccgcatcacctgattctccaacaacgccggacattgagtcagcgctcctc
acacgtcgaaactcgtatggtgcatccgacccaacatcagaagcctcaccaacacctccg
caacgaaatccgaatcacaacaaacgtcttcaactttacgttccgggacgtgtaatctat
ttgtccgctgatcaagacactggtgccacagtggaaacgtggattgatccaaagtgtctg
agtgatgtgaagctatcagtatcagtactatcagatcatttaccggcggcggttcagaaa
ttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCACCGCCCGGATGTGTGATCA 626 667 1453 Antisense
GTCTACATCGACTCAGGGAACGCGT 640 467 1562 Antisense
GGAACGCGTTTTTCAAGAGCTTCTT 208 531 1578 Antisense
GAGCTTCTTGCTTGTCAACGAGCTA 280 389 1594 Antisense
ATACGTGGCGTTTATCAGCTTTTTT 390 465 1633 Antisense
GGAGACGAGCTTTCAGGTGTGCCAC 271 519 1672 Antisense
AACGCCGGACATTGAGTCAGCGCTC 684 145 1725 Antisense
CACCTCCGCAACGAAATCCGAATCA 614 201 1805 Antisense
TCCGCTGATCAAGACACTGGTGCCA 497 595 1876 Antisense
TACTATCAGATCATTTACCGGCGGC 74 645 1958 Antisense
TACCGGCGGCGGTTCAGAAATTCCT 369 647 1973 Antisense
Sequence Source Affymetrix Proprietary Database