[Home] | [Total List]

[183552_s_at]

Description M03D4.6 /REP_DB=WormBase Gene ID /WP=CE17189 /TR=Q21495 /GB=AAC24409.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 53.8
(-3)
P 		109.7
(3)
A 		56.9
(-2.7)
A 		109.7
(3)
P 		56
B 85.6
(-3)
P 		92.2
(-0.6)
A 		102.3
(3)
A 		99.1
(1.9)
P 		17
C 81.2
(-1.3)
A 		57.5
(-3)
A 		82.4
(-1.2)
P 		142.3
(3)
P 		85
avr 73.5
(-3) 		86.5
(-1.2) 		80.5
(-2) 		117
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 69.3
(-1.1)
A 		85
(3)
P 		78.4
(1.3)
M 		83.3
(2.6)
A 		75.6
(0.5)
A 		62
(-3)
P 		23
B 81
(3)
A 		28.6
(-3)
A 		55.1
(0)
A 		40.4
(-1.6)
A 		71.3
(1.9)
A 		69.9
(1.7)
P 		52
C 69.6
(0.7)
P 		43.5
(-3)
M 		74.1
(1.3)
A 		66.4
(0.2)
A 		55.6
(-1.3)
A 		86.4
(3)
A 		43
avr 73.3
(3) 		52.4
(-3) 		69.2
(1.8) 		63.4
(0.2) 		67.5
(1.3) 		72.8
(2.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 19.6
(0.2)
P 		23.8
(3)
A 		14.9
(-3)
A 		16.1
(-2.2)
P 		9
B 27.3
(3)
P 		22.8
(-1.4)
A 		23.7
(-0.5)
A 		21.1
(-3)
P 		6
C 26.9
(2.1)
A 		16.5
(-3)
A 		28.7
(3)
P 		24
(0.7)
P 		12
avr 24.6
(3) 		21
(-2.1) 		22.4
(-0.1) 		20.4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12.8
(-3)
A 		30.2
(3)
P 		17.1
(-1.5)
M 		21.1
(-0.1)
A 		22.8
(0.4)
A 		15.1
(-2.2)
P 		17
B 28.2
(2.8)
A 		9.5
(-3)
A 		13.4
(-1.8)
A 		10.7
(-2.6)
A 		29
(3)
A 		26
(2.1)
P 		20
C 25.8
(1.8)
P 		13.3
(-3)
M 		18.9
(-0.8)
A 		13.4
(-3)
A 		18
(-1.2)
A 		28.9
(3)
A 		16
avr 22.3
(2.3) 		17.7
(-1.1) 		16.5
(-2) 		15.1
(-3) 		23.3
(3) 		23.3
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183552_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11191
Sequence Type Exemplar sequence
Representative Public ID M03D4.6 NCBI
Target Description M03D4.6 /REP_DB=WormBase Gene ID /WP=CE17189 /TR=Q21495 /GB=AAC24409.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068520 NCBI Caenorhabditis elegans M03D4.6 (M03D4.6) mRNA, complete cds. 11/11 None
M03D4.6 ENSEMBL cdna:known chromosome:CEL140:IV:6142917:6145648:-1 gene:M03D4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6143172-6146615(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03D4.6
Entrez Gene 177376 Entrez gene
SwissProt Q21495 EMBL-EBI
WormBase CE37264 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24409 Hypothetical protein M03D4.6 [Caenorhabditis elegans] ref|NP_500921.2| M03D4.6 [Caenorhabditis elegans] 0.0
blast AAF99978 Hypothetical protein F56A6.1a [Caenorhabditis elegans] ref|NP_490758.1| F56A6.1a [Caenorhabditis elegans] 4.0E-59
blast AAO38667 Paz/piwi domain-containing protein 1, isoform c [Caenorhabditis elegans] ref|NP_491323.2| PAZ/PIWI domain-containing family member (ppw-1) [Caenorhabditis elegans] 7.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 3.3E-122
Sequence
Target Sequence 
>C. ELEGANS:183552_S_AT
tcaattccctcagaagtgcccgaaaagctcgaaaaatcaagcctatgaacattgttattt
acttgtgtgggatgagtgaaagtcggttcagtatcgtcaaggaagagtacgtcagaaatt
gtcattcggttttcaagacgctcggagaaaaatatagtccccagttgacgattattgtgg
gatccaaaggccacagtacgagactctacgcgagaggggaacgagaccaaatatcaaacc
tgcagccaggaaccattgttgactctgtaattgtgtctccagattataataaattcttcc
attgtggtgcagttgcccgtcaagggacatgcaaagcaacgaaatatacagtcttgtatc
cggagtcaccaaaaatggaatggattcagcggatgactaacgatctttgttatatgcatg
agatcgtttttcatccagtcagccttccagcgccactataccttacagccgagatggccg
agcgtggaactaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTCCCTCAGAAGTGCCCGAAA 369 627 1106 Antisense
CATTCGGTTTTCAAGACGCTCGGAG 136 211 1228 Antisense
GCCACAGTACGAGACTCTACGCGAG 653 277 1295 Antisense
GACCAAATATCAAACCTGCAGCCAG 532 383 1330 Antisense
AGCCAGGAACCATTGTTGACTCTGT 408 83 1349 Antisense
TTCTTCCATTGTGGTGCAGTTGCCC 651 689 1399 Antisense
GCAGTTGCCCGTCAAGGGACATGCA 57 311 1414 Antisense
CAGTCTTGTATCCGGAGTCACCAAA 467 205 1454 Antisense
TGAGATCGTTTTTCATCCAGTCAGC 639 567 1524 Antisense
CACTATACCTTACAGCCGAGATGGC 232 195 1559 Antisense
CCGAGATGGCCGAGCGTGGAACTAA 675 261 1574 Antisense
Sequence Source Affymetrix Proprietary Database