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[183551_at]

Description F40G9.4 /REP_DB=WormBase Gene ID /WP=CE19851 /TR=Q9TZ71 /GB=AAC68799.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 51      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 5
(-3)
A 		27
(3)
A 		7.7
(-2.3)
A 		9.6
(-1.7)
A 		22
B 21.8
(3)
A 		12.1
(-1)
A 		19.3
(2)
A 		7.4
(-3)
A 		14
C 3.7
(0)
A 		3.1
(-3)
A 		3.4
(-1.5)
A 		4.3
(3)
A 		1
avr 10.2
(-0.3) 		14.1
(3) 		10.1
(-0.4) 		7.1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 6.4
(-3)
A 		10.1
(-1.9)
A 		6.8
(-2.9)
A 		27.4
(3)
A 		25.7
(2.5)
A 		11.4
(-1.6)
A 		21
B 3.3
(-2.6)
A 		3
(-2.7)
A 		23.2
(3)
A 		15
(0.7)
A 		5.2
(-2.1)
A 		1.9
(-3)
A 		21
C 3.5
(-3)
A 		34.4
(2.4)
A 		32
(2)
A 		23.9
(0.6)
A 		3.7
(-3)
A 		37.9
(3)
A 		34
avr 4.4
(-3) 		15.8
(0.9) 		20.7
(2.5) 		22.1
(3) 		11.5
(-0.6) 		17.1
(1.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.8
(-2.5)
A 		5.9
(3)
A 		2
(-2.2)
A 		1.4
(-3)
A 		5
B 6.9
(3)
A 		3
(-1.4)
A 		4.5
(0.3)
A 		1.6
(-3)
A 		5
C 1.2
(3)
A 		0.9
(-0.6)
A 		1.2
(3)
A 		0.7
(-3)
A 		1
avr 3.3
(3) 		3.3
(3) 		2.6
(1) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-3)
A 		3.6
(-0.8)
A 		1.5
(-2.7)
A 		7
(2.3)
A 		7.8
(3)
A 		2.8
(-1.5)
A 		7
B 1.1
(-2.5)
A 		1
(-2.6)
A 		5.6
(3)
A 		4
(1)
A 		2.1
(-1.3)
A 		0.7
(-3)
A 		5
C 1.3
(-2.9)
A 		10.5
(1.9)
A 		8.1
(0.6)
A 		4.8
(-1.1)
A 		1.2
(-3)
A 		12.7
(3)
A 		12
avr 1.2
(-3) 		5
(2.4) 		5.1
(2.6) 		5.3
(2.9) 		3.7
(0.6) 		5.4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8120
Sequence Type Exemplar sequence
Representative Public ID F40G9.4 NCBI
Target Description F40G9.4 /REP_DB=WormBase Gene ID /WP=CE19851 /TR=Q9TZ71 /GB=AAC68799.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064771 NCBI Caenorhabditis elegans Helix Loop Helix family member (hlh-21) (hlh-21) mRNA, complete cds. 11/11 None
SNAP00000021773 ENSEMBL cdna:SNAP chromosome:CEL140:III:183521:188066:1 11/11 None
GENEFINDER00000021781 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:185651:186921:1 10/11 None
F40G9.4 ENSEMBL cdna:known chromosome:CEL140:III:185651:186921:1 gene:F40G9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:185650-186921(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol hlh-21
Ensembl F40G9.4
Entrez Gene 185553 Entrez gene
SwissProt Q9TZ71 EMBL-EBI
WormBase CE19851 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68799 Helix loop helix protein 21 [Caenorhabditis elegans] ref|NP_497172.1| Helix Loop Helix family member (hlh-21) [Caenorhabditis elegans] 1.0E-128
blast AAC68799 Helix loop helix protein 21 [Caenorhabditis elegans] ref|NP_497172.1| Helix Loop Helix family member (hlh-21) [Caenorhabditis elegans] 1.0E-120
blast AAC68800 Hypothetical protein F40G9.5 [Caenorhabditis elegans] ref|NP_497171.1| F40G9.5 [Caenorhabditis elegans] 1.0E-120
blast AAC68799 Helix loop helix protein 21 [Caenorhabditis elegans] ref|NP_497172.1| Helix Loop Helix family member (hlh-21) [Caenorhabditis elegans] 1.0E-105
blast CAE69519 Hypothetical protein CBG15728 [Caenorhabditis briggsae] 7.0E-82
blast AAN65317 Hypothetical protein F39E9.11 [Caenorhabditis elegans] ref|NP_872000.1| F39E9.11 [Caenorhabditis elegans] 2.0E-32
blast CAE62229 Hypothetical protein CBG06281 [Caenorhabditis briggsae] 3.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.6E-23
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.6E-23
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.6E-14
Sequence
Target Sequence 
>C. ELEGANS:183551_AT
atcgcaatgacaatcttctccagttgagattcaattggagtgacctgaaagaacaaggcg
tggaaggactcaatttgactcttattaaatctcaatttttgacaaaatccgaaaattctg
atgcaattcttctagttgaagatacgaagcttcatgttaataaagctttcctctcgtatc
attccgagttcttccgcgggttgtttgagtttgaaagtgaggagaagcagaagaatgaat
tcaagatcagtgatgtttcggcagacgatatgaaggctttcttagccattattcacccgg
gaaatgacttcccgacggacagtaatgccaagaaacttctggaattggctgatcgtttca
tggttccgttcgttacgagttccgtagagaatcatcttctcaaatccacggaaatcgatc
atgtaacaaagatttggttggctgacaaatttcaattggagaaactcatgaaccacgcga
tttcaaccattgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCAATGACAATCTTCTCCAGTT 455 37 98 Antisense
GGCGTGGAAGGACTCAATTTGACTC 36 541 154 Antisense
CTCTCGTATCATTCCGAGTTCTTCC 119 231 268 Antisense
TCTTCCGCGGGTTGTTTGAGTTTGA 325 615 287 Antisense
AGATCAGTGATGTTTCGGCAGACGA 212 67 341 Antisense
TTTCTTAGCCATTATTCACCCGGGA 508 671 375 Antisense
GACTTCCCGACGGACAGTAATGCCA 639 371 403 Antisense
TCCGTTCGTTACGAGTTCCGTAGAG 143 549 462 Antisense
GAATCATCTTCTCAAATCCACGGAA 608 327 486 Antisense
GGAGAAACTCATGAACCACGCGATT 19 519 555 Antisense
GAACCACGCGATTTCAACCATTGAG 708 343 567 Antisense
Sequence Source Affymetrix Proprietary Database