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[183550_at]

Description C46G7.1 /REP_DB=WormBase Gene ID /WP=CE08777 /TR=O02142 /GB=AAB52877.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 29      4grp_high_8_8 > 04      6grp_highest_nonorm > 13      6grp_total > 04      4grp_total > 05      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3607
1 2 3 4 range
A 3827.9
(3)
P 		2457.8
(-3)
P 		3330.6
(0.8)
P 		3808.5
(2.9)
P 		1370
B 3757.6
(-0.5)
P 		2429.5
(-3)
P 		3357.6
(-1.2)
P 		5607.3
(3)
P 		3178
C 3439.4
(-3)
P 		3573.4
(-2.7)
P 		3482.1
(-2.9)
P 		6036.3
(3)
P 		2597
avr 3675
(-0.8) 		2820.2
(-3) 		3390.1
(-1.5) 		5150.7
(3) 		2331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2011
1 2 3 4 5 6 range
A 2934
(0.8)
P 		2892.7
(0.7)
P 		3542.4
(3)
P 		2894.7
(0.7)
P 		2925.3
(0.8)
P 		1882.5
(-3)
P 		1660
B 3893.5
(3)
P 		3107.9
(0.5)
P 		2130.8
(-2.6)
P 		2976.2
(0.1)
P 		2959.7
(0)
P 		2012.9
(-3)
P 		1881
C 3549
(3)
P 		3411.8
(2.5)
P 		2883.5
(0.6)
P 		2183.8
(-2)
P 		2987.3
(0.9)
P 		1908.6
(-3)
P 		1640
avr 3458.8
(3) 		3137.5
(1.7) 		2852.2
(0.6) 		2684.9
(-0) 		2957.4
(1) 		1934.7
(-3) 		1524
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 860
1 2 3 4 range
A 1393.7
(3)
P 		533.5
(-3)
P 		870.7
(-0.6)
P 		557.5
(-2.8)
P 		860
B 1198.3
(3)
P 		600
(-3)
P 		778
(-1.2)
P 		1194.9
(3)
P 		598
C 1138.5
(0.7)
P 		1027.4
(-2.7)
P 		1213.6
(3)
P 		1017.8
(-3)
P 		196
avr 1243.5
(3) 		720.3
(-3) 		954.1
(-0.3) 		923.4
(-0.7) 		523

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 916
1 2 3 4 5 6 range
A 540.9
(-2.1)
P 		1028.8
(3)
P 		771.5
(0.3)
P 		734.2
(-0.1)
P 		882.7
(1.5)
P 		458.3
(-3)
P 		571
B 1354.7
(3)
P 		1034.5
(0.7)
P 		517.4
(-3)
P 		788.3
(-1.1)
P 		1202.5
(1.9)
P 		750.6
(-1.3)
P 		837
C 1315.5
(3)
P 		1041.1
(1.1)
P 		733.9
(-1)
P 		439.2
(-3)
P 		966.7
(0.6)
P 		638.9
(-1.6)
P 		876
avr 1070.4
(3) 		1034.8
(2.5) 		674.3
(-2.2) 		653.9
(-2.5) 		1017.3
(2.3) 		615.9
(-3) 		455
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11190
Sequence Type Exemplar sequence
Representative Public ID C46G7.1 NCBI
Target Description C46G7.1 /REP_DB=WormBase Gene ID /WP=CE08777 /TR=O02142 /GB=AAB52877.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068504(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068504 NCBI Caenorhabditis elegans C46G7.1 (C46G7.1) mRNA, complete cds. 9/11 None
SNAP00000030352 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6015181:6019577:1 9/11 None
GENEFINDER00000030358 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6018001:6019577:1 9/11 None
C46G7.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:6017984:6019687:1 gene:C46G7.1 9/11 None
C46G7.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:6017986:6019696:1 gene:C46G7.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6018177-6019583(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46G7.1
Entrez Gene 177368 Entrez gene
SwissProt O02142 EMBL-EBI
WormBase CE37213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500904 C46G7.2 [Caenorhabditis elegans] gb|AAB52876.1| Hypothetical protein C46G7.2 [Caenorhabditis elegans] 1.0E-129
blast CAE64690 Hypothetical protein CBG09472 [Caenorhabditis briggsae] 1.0E-122
blast CAB60108 29kDa protein from Anisakis simplex 2.0E-68
blast NP_500905 C46G7.1 [Caenorhabditis elegans] gb|AAB52877.2| Hypothetical protein C46G7.1 [Caenorhabditis elegans] 5.0E-50
blast CAE64689 Hypothetical protein CBG09471 [Caenorhabditis briggsae] 1.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500905.2 2 7-29,66-85
C46G7.1.1 2 7-29,66-85
C46G7.1.2 2 7-29,66-85
SNAP00000030352 1 264-283
GENEFINDER00000030358 2 7-29,66-85
Sequence
Target Sequence 
>C. ELEGANS:183550_AT
aaaatcctgtttcactatgcaattctcggaggactattctacaatcaatctgttggatta
tttgaggatcttcccaaagaatcgaaagctatggagaaaagtctatgggctgataggaca
acaaattttaataagctctaccaacaaaatgcctacaattgctggatcgcctgcggagtt
tacatcggaattgcagttcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCCTGTTTCACTATGCAATTC 377 133 52 Antisense
TCACTATGCAATTCTCGGAGGACTA 240 625 63 Antisense
GGAGGACTATTCTACAATCAATCTG 620 515 79 Antisense
GTTGGATTATTTGAGGATCTTCCCA 41 437 103 Antisense
GGATCTTCCCAAAGAATCGAAAGCT 543 509 117 Antisense
AAGTCTATGGGCTGATAGGACAACA 415 157 150 Antisense
TAAGCTCTACCAACAAAATGCCTAC 101 637 183 Antisense
ATGCCTACAATTGCTGGATCGCCTG 474 41 200 Antisense
AATTGCTGGATCGCCTGCGGAGTTT 210 177 208 Antisense
ATCGCCTGCGGAGTTTACATCGGAA 417 35 217 Antisense
TTTACATCGGAATTGCAGTTCTTCT 382 673 230 Antisense
Sequence Source Affymetrix Proprietary Database