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[183549_at]

Description C49A9.5 /REP_DB=WormBase Gene ID /WP=CE16935 /TR=O44151 /GB=AAK29787.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_high_8_8 > 17      6grp_highest_nonorm > 90      6grp_total > 52      4grp_total > 31      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 157.7
(3)
P 		88.6
(-1.1)
P 		55.5
(-3)
P 		82.8
(-1.4)
P 		102
B 140.4
(3)
P 		65.6
(-3)
A 		78
(-2)
P 		108.3
(0.4)
P 		75
C 169.8
(3)
P 		96.8
(-1.5)
M 		71.5
(-3)
P 		150.6
(1.8)
P 		98
avr 156
(3) 		83.7
(-1.9) 		68.3
(-3) 		113.9
(0.1) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 119.9
(-2)
P 		145.7
(-1.2)
P 		282.8
(3)
P 		184.9
(0)
P 		124
(-1.8)
P 		85.4
(-3)
P 		197
B 138.1
(-1.2)
P 		182
(-0.2)
P 		316.5
(3)
P 		180.7
(-0.2)
P 		117.4
(-1.7)
P 		64.3
(-3)
P 		252
C 170.5
(1)
P 		184.6
(1.6)
P 		168
(0.9)
P 		217.8
(3)
P 		95.9
(-2.3)
P 		78.6
(-3)
P 		139
avr 142.8
(-0.8) 		170.8
(0.2) 		255.8
(3) 		194.5
(1) 		112.4
(-1.8) 		76.1
(-3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 57.4
(3)
P 		19.2
(-2.1)
P 		14.5
(-2.7)
P 		12.1
(-3)
P 		45
B 44.8
(3)
P 		16.2
(-3)
A 		18.1
(-2.6)
P 		23.1
(-1.6)
P 		29
C 56.2
(3)
P 		27.8
(-2.4)
M 		24.9
(-3)
P 		25.4
(-2.9)
P 		31
avr 52.8
(3) 		21.1
(-2.7) 		19.2
(-3) 		20.2
(-2.8) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 22.1
(-2.8)
P 		51.8
(1.6)
P 		61.6
(3)
P 		46.9
(0.8)
P 		37.4
(-0.6)
P 		20.8
(-3)
P 		41
B 48.1
(-0.3)
P 		60.6
(1.2)
P 		76.8
(3)
P 		47.9
(-0.3)
P 		47.7
(-0.3)
P 		24
(-3)
P 		53
C 63.2
(3)
P 		56.3
(1.9)
P 		42.8
(-0.3)
P 		43.8
(-0.2)
P 		31
(-2.2)
P 		26.3
(-3)
P 		37
avr 44.5
(0.4) 		56.2
(2.3) 		60.4
(3) 		46.2
(0.7) 		38.7
(-0.5) 		23.7
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10754
Sequence Type Exemplar sequence
Representative Public ID C49A9.5 NCBI
Target Description C49A9.5 /REP_DB=WormBase Gene ID /WP=CE16935 /TR=O44151 /GB=AAK29787.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068532 NCBI Caenorhabditis elegans C49A9.5 (C49A9.5) mRNA, complete cds. 11/11 None
SNAP00000001922 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6213868:6216128:1 11/11 None
GENEFINDER00000001928 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6213883:6216128:1 11/11 None
C49A9.5 ENSEMBL cdna:known chromosome:CEL140:IV:6213806:6216349:1 gene:C49A9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6213873-6216134(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A9.5
Entrez Gene 177382 Entrez gene
SwissProt O44151 EMBL-EBI
WormBase CE16935 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29787 Hypothetical protein C49A9.5 [Caenorhabditis elegans] ref|NP_500933.1| C49A9.5 [Caenorhabditis elegans] 0.0
blast AAK29792 Hypothetical protein C49A9.9a [Caenorhabditis elegans] ref|NP_001023084.1| C49A9.9a [Caenorhabditis elegans] 1.0E-131
blast T32521 hypothetical protein C49A9.4 - Caenorhabditis elegans 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 4.6E-79
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 4.6E-79
Sequence
Target Sequence 
>C. ELEGANS:183549_AT
ttatgggcacgggatttccaaaatctacaaaaagagaagaaaatgttttcggatccgaat
tattgcaacaaaagaaaaacaatgaaaagccaggctcaacagttggcaaaggatttacta
cttcacaaacgataggagagaagcaaagagctgttgtgacaagtatcgacgcaaaacgac
ctggtacatattacttgtggaatctcgattcaaaaactgaaggcttgctcaaatcaacaa
ccccgttggaattaggccatcaatttgcaggaatttttgtaaaccaggaaaatggaaaat
gcttttgcaaagaatatataggtgaaatagaacgagttttggaaggcaaagtgaatgata
caaataaggtgaatttaactgttaaactgctcgattttcaaccagcaggggttaacagaa
gacgtgcaagtgggactgcaaaatatataggagatgtgttagaaggaaacacggaagaca
ctaaactcacaattgaatgcatcggaaaaaaggtcaacattgaacgacgtaaatttggag
agaaggactttgtttggatggttaccgagattcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGGGCACGGGATTTCCAAAATC 7 665 710 Antisense
AAAGCCAGGCTCAACAGTTGGCAAA 674 123 795 Antisense
AAGGATTTACTACTTCACAAACGAT 235 159 818 Antisense
GCTGTTGTGACAAGTATCGACGCAA 603 295 859 Antisense
ATCGACGCAAAACGACCTGGTACAT 156 37 874 Antisense
CTTGCTCAAATCAACAACCCCGTTG 217 217 933 Antisense
ACCCCGTTGGAATTAGGCCATCAAT 588 83 949 Antisense
TAACTGTTAAACTGCTCGATTTTCA 155 637 1085 Antisense
GCTCGATTTTCAACCAGCAGGGGTT 186 297 1098 Antisense
GAAACACGGAAGACACTAAACTCAC 86 357 1175 Antisense
GTTTGGATGGTTACCGAGATTCGTA 646 451 1261 Antisense
Sequence Source Affymetrix Proprietary Database