[Home] | [Total List]

[183547_at]

Description C44C1.2 /REP_DB=WormBase Gene ID /WP=CE04212 /TR=Q18607 /GB=AAA82362.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 73      6grp_total > 60      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 359
1 2 3 4 range
A 577.6
(2)
P 		630.6
(3)
P 		519.6
(0.9)
P 		308.1
(-3)
P 		323
B 533.4
(0.9)
P 		591.3
(1.9)
P 		658.8
(3)
P 		300
(-3)
P 		359
C 634.1
(3)
P 		475.4
(-1.2)
P 		614.5
(2.5)
P 		406.9
(-3)
P 		227
avr 581.7
(2.6) 		565.8
(2.3) 		597.6
(3) 		338.3
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 559.3
(-0.3)
P 		594.5
(1.8)
P 		527.7
(-2.1)
P 		615
(3)
P 		515.6
(-2.8)
P 		512.7
(-3)
P 		102
B 585.4
(0.9)
P 		539.1
(-1.6)
P 		622.6
(2.9)
P 		604.2
(1.9)
P 		624.4
(3)
P 		512.5
(-3)
P 		112
C 461.6
(-2.4)
P 		543.6
(-0)
P 		615.9
(2.1)
P 		645.9
(3)
P 		442.2
(-3)
P 		604.6
(1.8)
P 		204
avr 535.4
(-2.5) 		559.1
(-1) 		588.7
(0.9) 		621.7
(3) 		527.4
(-3) 		543.3
(-2) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 210.3
(3)
P 		136.9
(0.3)
P 		135.8
(0.3)
P 		45.1
(-3)
P 		165
B 170.1
(3)
P 		146
(1.6)
P 		152.7
(2)
P 		63.9
(-3)
P 		106
C 209.9
(2.8)
P 		136.7
(-0.2)
P 		214.2
(3)
P 		68.6
(-3)
P 		146
avr 196.8
(3) 		139.9
(0.5) 		167.6
(1.7) 		59.2
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 103.1
(-3)
P 		211.4
(3)
P 		114.9
(-2.3)
P 		156
(-0.1)
P 		155.6
(-0.1)
P 		124.8
(-1.8)
P 		108
B 203.7
(0.1)
P 		179.4
(-1.3)
P 		151.2
(-3)
P 		160
(-2.5)
P 		253.7
(3)
P 		191.1
(-0.7)
P 		103
C 171.1
(0.4)
P 		165.9
(-0)
P 		156.7
(-0.8)
P 		129.9
(-3)
P 		143.1
(-1.9)
P 		202.4
(3)
P 		73
avr 159.3
(-0.5) 		185.6
(3) 		140.9
(-3) 		148.6
(-2) 		184.1
(2.8) 		172.8
(1.3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18315
Sequence Type Exemplar sequence
Representative Public ID C44C1.2 NCBI
Target Description C44C1.2 /REP_DB=WormBase Gene ID /WP=CE04212 /TR=Q18607 /GB=AAA82362.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075784 NCBI Caenorhabditis elegans C44C1.2 (C44C1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000015472 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:957924:960477:1 11/11 None
SNAP00000015463 ENSEMBL cdna:SNAP chromosome:CEL140:X:959203:960477:1 11/11 None
C44C1.2 ENSEMBL cdna:known chromosome:CEL140:X:957883:960566:1 gene:C44C1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:959280-960477(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44C1.2
Entrez Gene 180447 Entrez gene
SwissProt Q18607 EMBL-EBI
WormBase CE30126 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82362 Hypothetical protein C44C1.2 [Caenorhabditis elegans] ref|NP_508185.2| C44C1.2 [Caenorhabditis elegans] 0.0
blast CAE63592 Hypothetical protein CBG08083 [Caenorhabditis briggsae] 1.0E-152
blast AAA82362 Hypothetical protein C44C1.2 [Caenorhabditis elegans] ref|NP_508185.2| C44C1.2 [Caenorhabditis elegans] 1.0E-98
blast CAE63592 Hypothetical protein CBG08083 [Caenorhabditis briggsae] 6.0E-81
blast NP_503420 R09B5.12 [Caenorhabditis elegans] gb|AAD34651.3| Hypothetical protein R09B5.12 [Caenorhabditis elegans] 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:183547_AT
aagtgattctaacagttcctgcgcccctggaatggaataaccaacccaacaatctcgtga
ctccggatgactttaagaagatcacagctgtttccgattttgttcagataatgacctacg
attaccggggaaacaaaccagctggtgtggctccatacgactggtttgagagctgtatct
tctacttgggaggtggccacaaaacactggcgggactcaatttctacggctatgagttct
ccaaaggcaatgtggaagcaatcactgcggatagatacttgacactattgaaatctgaaa
aatccaagttggagtttgacgaaaagtcaatggagcacagagtaaagacctctaattcca
tcgcctatttcccatcactcacctcgctggaacttcgcatcaatatggctcaccgctacg
atgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGATTCTAACAGTTCCTGCGCC 475 157 32 Antisense
CCTGCGCCCCTGGAATGGAATAACC 248 267 49 Antisense
ACAATCTCGTGACTCCGGATGACTT 59 115 80 Antisense
AGATCACAGCTGTTTCCGATTTTGT 100 67 110 Antisense
AACAAACCAGCTGGTGTGGCTCCAT 196 135 163 Antisense
GTGGCTCCATACGACTGGTTTGAGA 524 491 178 Antisense
GAGAGCTGTATCTTCTACTTGGGAG 285 395 199 Antisense
AACACTGGCGGGACTCAATTTCTAC 32 137 234 Antisense
AATTTCTACGGCTATGAGTTCTCCA 4 175 250 Antisense
CCTCGCTGGAACTTCGCATCAATAT 651 265 413 Antisense
TCAATATGGCTCACCGCTACGATGT 565 631 431 Antisense
Sequence Source Affymetrix Proprietary Database