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[183546_s_at]

Description K02F2.3 /REP_DB=WormBase Gene ID /WP=CE17155 /TR=O44985 /GB=AAB97566.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 84      6grp_total > 37      4grp_total > 53      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 816.9
(3)
P 		663
(0.3)
P 		554.5
(-1.6)
P 		476.7
(-3)
P 		340
B 640.5
(1.6)
P 		710.8
(3)
P 		588.1
(0.6)
P 		404.1
(-3)
P 		307
C 812.7
(3)
P 		754
(1.9)
P 		670.9
(0.4)
P 		486.1
(-3)
P 		327
avr 756.7
(3) 		709.3
(2.1) 		604.5
(-0) 		455.6
(-3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 713.2
(2.4)
P 		743.8
(3)
P 		420.3
(-3)
P 		521.6
(-1.1)
P 		513.1
(-1.3)
P 		718.7
(2.5)
P 		324
B 747.1
(3)
P 		619
(0.3)
P 		479
(-2.6)
P 		458.7
(-3)
P 		465
(-2.9)
P 		652.2
(1)
P 		288
C 892.6
(3)
P 		632.5
(-1.3)
P 		594.7
(-1.9)
P 		722.1
(0.2)
P 		525.6
(-3)
P 		721
(0.2)
P 		367
avr 784.3
(3) 		665.1
(0.5) 		498
(-3) 		567.5
(-1.5) 		501.2
(-2.9) 		697.3
(1.2) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 297.4
(3)
P 		143.9
(-1)
P 		145
(-1)
P 		69.8
(-3)
P 		228
B 204.3
(3)
P 		175.6
(1.5)
P 		136.3
(-0.5)
P 		86.1
(-3)
P 		118
C 269
(3)
P 		216.8
(1.3)
P 		233.8
(1.9)
P 		82
(-3)
P 		187
avr 256.9
(3) 		178.8
(0.4) 		171.7
(0.1) 		79.3
(-3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 131.5
(-1.6)
P 		264.5
(3)
P 		91.5
(-3)
P 		132.3
(-1.6)
P 		154.8
(-0.8)
P 		175
(-0.1)
P 		173
B 260
(3)
P 		206
(0.7)
P 		116.3
(-3)
P 		121.5
(-2.8)
P 		188.9
(0)
P 		243.2
(2.3)
P 		144
C 330.8
(3)
P 		193
(-1.5)
P 		151.4
(-2.8)
P 		145.2
(-3)
P 		170.1
(-2.2)
P 		241.4
(0.1)
P 		186
avr 240.8
(3) 		221.2
(2) 		119.7
(-3) 		133
(-2.3) 		171.3
(-0.4) 		219.9
(2) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183546_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2385
Sequence Type Exemplar sequence
Representative Public ID K02F2.3 NCBI
Target Description K02F2.3 /REP_DB=WormBase Gene ID /WP=CE17155 /TR=O44985 /GB=AAB97566.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059552 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-203) (tag-203) mRNA, complete cds. 11/11 None
SNAP00000018475 ENSEMBL cdna:SNAP chromosome:CEL140:I:6840579:6842316:1 11/11 None
GENEFINDER00000018486 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6840717:6842534:1 11/11 None
K02F2.3 ENSEMBL cdna:known chromosome:CEL140:I:6822662:6842810:1 gene:K02F2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6822592-6842465(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-203
Ensembl K02F2.3
Entrez Gene 172406 Entrez gene
SwissProt O44985 EMBL-EBI
WormBase CE17155 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251837_S_AT splicing factor, putative at
CANINE_2:CFA.19483.1.S1_S_AT similar to splicing factor 3b, subunit 3 cfa
CANINE_2:CFA.19483.2.S1_AT similar to splicing factor 3b, subunit 3 cfa
CANINE_2:CFAAFFX.30859.1.S1_AT similar to splicing factor 3b, subunit 3 cfa
DROSOPHILA_2:1633394_A_AT dm
DROSGENOME1:147940_AT dm
CHICKEN:GGA.1318.1.S1_S_AT similar to KIAA0017 protein gga
CHICKEN:GGAAFFX.11447.1.S1_S_AT similar to KIAA0017 protein gga
CHICKEN:GGAAFFX.25526.2.S1_AT similar to KIAA0017 protein gga
CHICKEN:GGAAFFX.25526.2.S1_S_AT similar to KIAA0017 protein gga
HG-U133_PLUS_2:200687_S_AT splicing factor 3b, subunit 3, 130kDa hs
HG-U133A:200687_S_AT splicing factor 3b, subunit 3, 130kDa hs
HG-FOCUS:200687_S_AT splicing factor 3b, subunit 3, 130kDa hs
HG-U133A_2:200687_S_AT splicing factor 3b, subunit 3, 130kDa hs
HG-U133_PLUS_2:200688_AT splicing factor 3b, subunit 3, 130kDa hs
HG-U133A:200688_AT splicing factor 3b, subunit 3, 130kDa hs
HG-U133A_2:200688_AT splicing factor 3b, subunit 3, 130kDa hs
HU35KSUBB:RC_AA232671_S_AT splicing factor 3b, subunit 3, 130kDa hs
HUGENEFL:D13642_AT splicing factor 3b, subunit 3, 130kDa hs
U133_X3P:G285998_3P_AT splicing factor 3b, subunit 3, 130kDa hs
U133_X3P:G11034822_3P_A_AT splicing factor 3b, subunit 3, 130kDa hs
HG-U95AV2:32753_AT splicing factor 3b, subunit 3, 130kDa hs
MOUSE430A_2:1415985_AT splicing factor 3b, subunit 3 mm
MOUSE430_2:1415985_AT splicing factor 3b, subunit 3 mm
MOE430A:1415985_AT splicing factor 3b, subunit 3 mm
MU11KSUBA:AA691587_S_AT splicing factor 3b, subunit 3 mm
MG-U74AV2:160208_AT splicing factor 3b, subunit 3 mm
MOE430B:1430075_AT splicing factor 3b, subunit 3 mm
MOUSE430_2:1430075_AT splicing factor 3b, subunit 3 mm
MU19KSUBC:TC35884_AT Splicing factor 3b, subunit 3, mRNA (cDNA clone IMAGE:5059683) mm
MU19KSUBC:TC40920_AT Splicing factor 3b, subunit 3, mRNA (cDNA clone IMAGE:5059683) mm
RG-U34C:RC_AI234858_AT splicing factor 3b, subunit 3 (predicted) rn
RAE230A:1372501_AT splicing factor 3b, subunit 3 (predicted) rn
RAT230_2:1372501_AT splicing factor 3b, subunit 3 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB97566 Temporarily assigned gene name protein 203 [Caenorhabditis elegans] ref|NP_491953.1| Temporarily Assigned Gene name family member (tag-203) [Caenorhabditis elegans] 0.0
blast CAE67304 Hypothetical protein CBG12757 [Caenorhabditis briggsae] 0.0
blast XP_536791 PREDICTED: similar to splicing factor 3b, subunit 3 isoform 1 [Canis familiaris] 0.0
blast AAB97566 Temporarily assigned gene name protein 203 [Caenorhabditis elegans] ref|NP_491953.1| Temporarily Assigned Gene name family member (tag-203) [Caenorhabditis elegans] 1.0E-127
blast AAB97566 Temporarily assigned gene name protein 203 [Caenorhabditis elegans] ref|NP_491953.1| Temporarily Assigned Gene name family member (tag-203) [Caenorhabditis elegans] 1.0E-125
blast CAE67304 Hypothetical protein CBG12757 [Caenorhabditis briggsae] 1.0E-123
blast CAE67304 Hypothetical protein CBG12757 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR004871 EMBL-EBI CPSF A subunit, C-terminal 7.4E-90
Pfam IPR004871 EMBL-EBI CPSF A subunit, C-terminal 3.1E-8
Pfam IPR004871 EMBL-EBI CPSF A subunit, C-terminal 5.1E-72
Pfam IPR004871 EMBL-EBI CPSF A subunit, C-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183546_S_AT
tgtattcgctgatgacacaactccccgttacgtgacatgtgtttgtgttcttgattatca
tactgtagctgttgctgataagttcggaaatttggcagttgttcgtcttccggaaagagt
taatgaagatgtacaggatgatccaactgtatcgaagagtgtttgggatcgtggatggct
taatggagcttcacaaaaggtcgaacttgtttcgaatttcttcatcggtgacacgattac
aagccttcagaagacgtcattaatgcctggagcaaatgaagcattagtatatacaacaat
tggtggagctattggatgtttggtttcgttcatgtcaaaagatgaagtcgactttttcac
aaatctggaaatgcatgttcgcagtgaatatccgccattgtgtggccgtgatcatcttgc
ttatagaagttactacgcaccatgcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATTCGCTGATGACACAACTCCC 219 561 3087 Antisense
CAACTCCCCGTTACGTGACATGTGT 483 187 3104 Antisense
AAATTTGGCAGTTGTTCGTCTTCCG 295 115 3174 Antisense
TCGAATTTCTTCATCGGTGACACGA 542 599 3298 Antisense
GGTGACACGATTACAAGCCTTCAGA 657 499 3313 Antisense
GAAGACGTCATTAATGCCTGGAGCA 439 339 3336 Antisense
GGATGTTTGGTTTCGTTCATGTCAA 182 515 3400 Antisense
GCATGTTCGCAGTGAATATCCGCCA 397 309 3459 Antisense
ATATCCGCCATTGTGTGGCCGTGAT 279 21 3474 Antisense
TGGCCGTGATCATCTTGCTTATAGA 157 545 3489 Antisense
TAGAAGTTACTACGCACCATGCAAG 84 653 3510 Antisense
Sequence Source Affymetrix Proprietary Database