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[183544_at]

Description K03H6.4 /REP_DB=WormBase Gene ID /WP=CE18013 /TR=O45172 /GB=AAC04420.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      6grp_highest_nonorm > 81      6grp_total > 71      4grp_total > 62      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 286.9
(3)
P 		185
(-1.6)
P 		240.8
(0.9)
P 		153.7
(-3)
A 		133
B 248.6
(2.9)
P 		187.7
(1.2)
P 		251.4
(3)
P 		39.9
(-3)
A 		212
C 346.2
(3)
P 		186.9
(-0.3)
P 		156.9
(-1)
P 		59.5
(-3)
A 		287
avr 293.9
(3) 		186.5
(-0.1) 		216.4
(0.8) 		84.4
(-3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 121.8
(-2.9)
P 		174.9
(-1.9)
P 		306.2
(0.6)
P 		433.3
(3)
P 		244.1
(-0.6)
P 		116.8
(-3)
P 		317
B 81
(-3)
P 		162.2
(-1.4)
P 		372.2
(2.6)
P 		391.4
(3)
P 		275.6
(0.8)
P 		168.3
(-1.3)
P 		310
C 112.4
(-3)
P 		182.7
(-1.6)
P 		312.8
(1)
P 		415.9
(3)
P 		278
(0.3)
P 		189.8
(-1.5)
P 		304
avr 105.1
(-3) 		173.3
(-1.7) 		330.4
(1.4) 		413.5
(3) 		265.9
(0.1) 		158.3
(-2) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 104.5
(3)
P 		40.1
(-1.7)
P 		63
(-0)
P 		22.5
(-3)
A 		82
B 79.3
(3)
P 		46.4
(0.2)
P 		58.2
(1.2)
P 		8.5
(-3)
A 		71
C 114.6
(3)
P 		53.7
(-0.5)
P 		54.7
(-0.4)
P 		10
(-3)
A 		105
avr 99.5
(3) 		46.7
(-0.7) 		58.6
(0.1) 		13.7
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 22.5
(-3)
P 		62.2
(-0.3)
P 		66.7
(0)
P 		109.9
(3)
P 		73.7
(0.5)
P 		28.4
(-2.6)
P 		87
B 28.2
(-3)
P 		54
(-1.2)
P 		90.4
(1.5)
P 		103.7
(2.4)
P 		112
(3)
P 		62.7
(-0.5)
P 		84
C 41.7
(-3)
P 		55.8
(-1.2)
P 		79.6
(1.7)
P 		83.6
(2.2)
P 		90
(3)
P 		63.5
(-0.3)
P 		48
avr 30.8
(-3) 		57.3
(-0.7) 		78.9
(1.2) 		99.1
(3) 		91.9
(2.4) 		51.5
(-1.2) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11160
Sequence Type Exemplar sequence
Representative Public ID K03H6.4 NCBI
Target Description K03H6.4 /REP_DB=WormBase Gene ID /WP=CE18013 /TR=O45172 /GB=AAC04420.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067690 NCBI Caenorhabditis elegans K03H6.4 (K03H6.4) mRNA, complete cds. 11/11 None
K03H6.4 ENSEMBL cdna:known chromosome:CEL140:IV:1515526:1521322:-1 gene:K03H6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035083 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035091 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035095 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1515531-1521328(-) 92.24 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H6.4
Entrez Gene 186964 Entrez gene
SwissProt O45172 EMBL-EBI
WormBase CE36598 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC04420 Hypothetical protein K03H6.4 [Caenorhabditis elegans] ref|NP_500091.2| K03H6.4 [Caenorhabditis elegans] 0.0
blast CAE67954 Hypothetical protein CBG13557 [Caenorhabditis briggsae] 3.0E-20
blast CAE67955 Hypothetical protein CBG13558 [Caenorhabditis briggsae] 5.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500091.2 6 13-32,42-64,85-107,127-149,220-242,247-269
K03H6.4 6 13-32,42-64,85-107,127-149,220-242,247-269
Sequence
Target Sequence 
>C. ELEGANS:183544_AT
ctcatttcagccctctatagcttgataatgtttaagagcattgccaatttcctctgcatg
tttctggtctaccacgagattcggcaaatttttgtatacatcttctcctgctgcccaaaa
gagtccagcacaattcaggtggtgcaattcaacaaaaatacgggcaaaatcaaattacaa
gggttccgaggaatgtctctgtgctacatatttgtgaatcaacggatggattttgattcg
gccgagaacagctgtagaagacaaccacagatatgggcgaatttggcaaaaatcgataat
gtaattgaatcgaactatcttgcaagaaccgccgccacaatcttcggaatggagcacgga
agcttctggattggagtctaccggccaaccgtctacgatccgttcaagaccatggatggt
agatactgtcaatatacacatttcaagaacgcaaatccatcgatggactatgccgctgaa
agtgtgaccgacgggtattggtcaacattttccaaggagacccgaatgccgtttgtatgc
tattacccggcaagtgaagcctacgcttctacgatgtcttcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATTTCAGCCCTCTATAGCTTGA 484 229 883 Antisense
CAATTTCCTCTGCATGTTTCTGGTC 333 181 927 Antisense
TCTGGTCTACCACGAGATTCGGCAA 27 609 945 Antisense
TTCTCCTGCTGCCCAAAAGAGTCCA 596 693 985 Antisense
GGGTTCCGAGGAATGTCTCTGTGCT 358 497 1063 Antisense
GCCGCCACAATCTTCGGAATGGAGC 653 285 1213 Antisense
GCTTCTGGATTGGAGTCTACCGGCC 49 307 1244 Antisense
CAACCGTCTACGATCCGTTCAAGAC 180 187 1268 Antisense
ATCCATCGATGGACTATGCCGCTGA 639 39 1337 Antisense
GAGACCCGAATGCCGTTTGTATGCT 506 393 1399 Antisense
CTACGCTTCTACGATGTCTTCGGAT 640 223 1443 Antisense
Sequence Source Affymetrix Proprietary Database