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[183542_at]

Description C24A1.2 /REP_DB=WormBase Gene ID /WP=CE27722 /TR=O17057 /GB=AAB70311.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 20.5
(-3)
A 		182.8
(0.9)
P 		151.3
(0.1)
A 		271.5
(3)
P 		251
B 62.9
(-3)
A 		213.7
(3)
P 		165.8
(1.1)
A 		188.7
(2)
P 		151
C 43.3
(-3)
A 		196.5
(2.1)
P 		147.7
(0.4)
P 		225
(3)
P 		182
avr 42.2
(-3) 		197.7
(2) 		154.9
(0.6) 		228.4
(3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 66
(-3)
A 		135.3
(2.6)
P 		120.5
(1.4)
P 		102.9
(0)
A 		139.6
(3)
P 		120.2
(1.4)
M 		74
B 110.8
(-1.6)
A 		144.9
(3)
P 		100.3
(-3)
A 		115
(-1)
P 		102.8
(-2.7)
M 		102.2
(-2.7)
P 		45
C 122.9
(-0.1)
A 		195.4
(3)
P 		73.5
(-2.3)
A 		119.4
(-0.3)
A 		56.3
(-3)
A 		90.6
(-1.5)
A 		139
avr 99.9
(-2.8) 		158.5
(3) 		98.1
(-3) 		112.4
(-1.6) 		99.6
(-2.9) 		104.3
(-2.4) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 7.4
(-3)
A 		39.7
(3)
P 		39.5
(3)
A 		39.7
(3)
P 		32
B 20.1
(-3)
A 		52.8
(3)
P 		38.4
(0.4)
A 		40.2
(0.7)
P 		33
C 14.3
(-3)
A 		56.5
(3)
P 		51.5
(2.3)
P 		37.9
(0.4)
P 		42
avr 13.9
(-3) 		49.7
(3) 		43.1
(1.9) 		39.3
(1.3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 12.2
(-3)
A 		48.1
(3)
P 		26.2
(-0.7)
P 		26.1
(-0.7)
A 		42.1
(2)
P 		29.3
(-0.1)
M 		36
B 38.6
(0.6)
A 		48.2
(3)
P 		24.4
(-3)
A 		30.5
(-1.5)
P 		41.8
(1.4)
M 		38.1
(0.5)
P 		24
C 45.6
(1)
A 		59.6
(3)
P 		18.7
(-2.9)
A 		24
(-2.2)
A 		18.2
(-3)
A 		30.3
(-1.2)
A 		41
avr 32.1
(-1.1) 		52
(3) 		23.1
(-3) 		26.9
(-2.2) 		34
(-0.7) 		32.6
(-1) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8186
Sequence Type Exemplar sequence
Representative Public ID C24A1.2 NCBI
Target Description C24A1.2 /REP_DB=WormBase Gene ID /WP=CE27722 /TR=O17057 /GB=AAB70311.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026010(11), NM_001026009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026010 NCBI Caenorhabditis elegans C24A1.2b (C24A1.2) mRNA, complete cds. 11/11 None
NM_001026009 NCBI Caenorhabditis elegans C24A1.2a (C24A1.2) mRNA, complete cds. 11/11 None
SNAP00000038340 ENSEMBL cdna:SNAP chromosome:CEL140:III:712944:715521:1 11/11 None
GENEFINDER00000038346 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:713049:715521:1 11/11 None
C24A1.2 ENSEMBL cdna:known chromosome:CEL140:III:706328:715834:1 gene:C24A1.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:706422-715521(+) 91.77 99.52
Public Domain and Genome References
Ensembl C24A1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021181 C24A1.2b [Caenorhabditis elegans] 0.0
blast AAB70311 Hypothetical protein C24A1.2a [Caenorhabditis elegans] ref|NP_001021180.1| C24A1.2a [Caenorhabditis elegans] 1.0E-178
blast AAB70311 Hypothetical protein C24A1.2a [Caenorhabditis elegans] ref|NP_001021180.1| C24A1.2a [Caenorhabditis elegans] 1.0E-163
blast AAZ82855 Hypothetical protein C24A1.2b [Caenorhabditis elegans] 1.0E-163
blast NP_001021181 C24A1.2b [Caenorhabditis elegans] 1.0E-163
blast AAB70311 Hypothetical protein C24A1.2a [Caenorhabditis elegans] ref|NP_001021180.1| C24A1.2a [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000418 EMBL-EBI Ets-domain 8.8E-50
Pfam IPR000418 EMBL-EBI Ets-domain 8.8E-50
Pfam IPR000418 EMBL-EBI Ets-domain 8.8E-50
Pfam IPR000418 EMBL-EBI Ets-domain 8.8E-50
Sequence
Target Sequence 
>C. ELEGANS:183542_AT
tattgactgcagctccattcatcagctcgaccgtgttcactccaacgtgtggtgaccttc
taaccacatgtactccatcaaatccatcacttcttcatccatatcttctagacacctctc
gtcgattctccgagccaaatcctgctccattggcacaacgaacacctggaaaaaagcaaa
aagatggacaagtcacgtatctttgggaatttttgttaagactgctgcaagacgaccaat
attcgccaaagtttattaaatggatagatcaagcaaaaggaatttttaaattggtcgact
cgaaagcagttagtcgtttgtggggaatgcataagaataagcctggaatgaattatgaga
caatgggaagagccctcagatattattatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGACTGCAGCTCCATTCATCAG 348 665 830 Antisense
GTGTTCACTCCAACGTGTGGTGACC 82 485 862 Antisense
GGTGACCTTCTAACCACATGTACTC 287 501 880 Antisense
ACATGTACTCCATCAAATCCATCAC 268 107 895 Antisense
TCATCCATATCTTCTAGACACCTCT 347 621 924 Antisense
TCTCGTCGATTCTCCGAGCCAAATC 581 609 946 Antisense
TCCTGCTCCATTGGCACAACGAACA 330 593 969 Antisense
GATGGACAAGTCACGTATCTTTGGG 600 403 1012 Antisense
GACTGCTGCAAGACGACCAATATTC 108 375 1049 Antisense
GAAAGCAGTTAGTCGTTTGTGGGGA 412 359 1131 Antisense
GGAAGAGCCCTCAGATATTATTATC 433 531 1195 Antisense
Sequence Source Affymetrix Proprietary Database