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[183540_at]

Description K02B12.6 /REP_DB=WormBase Gene ID /WP=CE06067 /TR=Q21113 /GB=CAB00030.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 3
(-3)
A 		65.5
(1)
A 		97.9
(3)
A 		17.6
(-2.1)
A 		95
B 24.3
(-1.9)
A 		113.2
(3)
P 		87.2
(1.6)
A 		4.1
(-3)
A 		109
C 33.6
(-3)
A 		100.2
(3)
M 		84.9
(1.6)
P 		36
(-2.8)
A 		67
avr 20.3
(-2.9) 		93
(3) 		90
(2.8) 		19.2
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 11.9
(-3)
A 		58.6
(2.1)
A 		32.1
(-0.8)
A 		55.1
(1.7)
P 		54.9
(1.7)
P 		66.7
(3)
A 		55
B 2.1
(-3)
A 		22.2
(-0.5)
A 		46.4
(2.6)
A 		46.9
(2.6)
A 		49.9
(3)
P 		39.3
(1.7)
A 		48
C 7.1
(-3)
A 		55.2
(2.6)
A 		43.1
(1.2)
A 		58.8
(3)
A 		51.9
(2.2)
A 		35.4
(0.3)
A 		52
avr 7
(-3) 		45.3
(1.9) 		40.5
(1.3) 		53.6
(3) 		52.2
(2.8) 		47.1
(2.2) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.1
(-3)
A 		14.2
(0.2)
A 		25.6
(3)
A 		2.6
(-2.6)
A 		25
B 7.7
(-1.5)
A 		28
(3)
P 		20.2
(1.3)
A 		0.9
(-3)
A 		27
C 11.1
(-1.7)
A 		28.8
(2.8)
M 		29.6
(3)
P 		6.1
(-3)
A 		24
avr 6.6
(-2.1) 		23.7
(2.6) 		25.1
(3) 		3.2
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.2
(-3)
A 		20.8
(3)
A 		7
(-1.5)
A 		14
(0.8)
P 		16.6
(1.6)
P 		16.2
(1.5)
A 		19
B 0.7
(-3)
A 		7.4
(-0.9)
A 		11.3
(0.2)
A 		12.4
(0.6)
A 		20.3
(3)
P 		14.7
(1.3)
A 		20
C 2.6
(-3)
A 		16.8
(3)
A 		11
(0.5)
A 		11.8
(0.9)
A 		16.8
(3)
A 		11.8
(0.9)
A 		14
avr 1.8
(-3) 		15
(1.9) 		9.8
(-0) 		12.7
(1.1) 		17.9
(3) 		14.2
(1.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183540_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1847
Sequence Type Exemplar sequence
Representative Public ID K02B12.6 NCBI
Target Description K02B12.6 /REP_DB=WormBase Gene ID /WP=CE06067 /TR=Q21113 /GB=CAB00030.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059908 NCBI Caenorhabditis elegans K02B12.6 (K02B12.6) mRNA, complete cds. 11/11 None
SNAP00000001146 ENSEMBL cdna:SNAP chromosome:CEL140:I:8527027:8527625:1 11/11 None
GENEFINDER00000001152 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8527027:8527625:1 11/11 None
K02B12.6 ENSEMBL cdna:known chromosome:CEL140:I:8527027:8527625:1 gene:K02B12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8526957-8527556(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02B12.6
Entrez Gene 186870 Entrez gene
SwissProt Q21113 EMBL-EBI
WormBase CE06067 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00030 Hypothetical protein K02B12.6 [Caenorhabditis elegans] ref|NP_492309.1| K02B12.6 [Caenorhabditis elegans] 4.0E-62
blast CAE67113 Hypothetical protein CBG12527 [Caenorhabditis briggsae] 3.0E-59
Sequence
Target Sequence 
>C. ELEGANS:183540_AT
gttctttccgtttgtaccattggtgcgctggctgttatggagcacaactcgtattatcct
ggtggacactccacgagctactaccaaccattccaaaccgatacctacggatccaagtac
tacaacaccgaatcctatggaaaatacgatgagcatggcaacaatggcaaggactcacac
tacgagccaaactactacaatccaattgcctcttactatcactcgtacatgccaaagtat
catggaggacacaatgactactacaccaagtacaaccaatacaccccatactacggagga
tcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTTCCGTTTGTACCATTGGTG 556 371 37 Antisense
ATTGGTGCGCTGGCTGTTATGGAGC 263 3 55 Antisense
GGAGCACAACTCGTATTATCCTGGT 336 519 75 Antisense
TATCCTGGTGGACACTCCACGAGCT 49 649 91 Antisense
CAAACCGATACCTACGGATCCAAGT 475 191 130 Antisense
CAAGTACTACAACACCGAATCCTAT 501 183 150 Antisense
GGCAAGGACTCACACTACGAGCCAA 207 535 202 Antisense
ACAATCCAATTGCCTCTTACTATCA 710 111 233 Antisense
TCTTACTATCACTCGTACATGCCAA 8 617 247 Antisense
GAGGACACAATGACTACTACACCAA 175 405 281 Antisense
ACACCCCATACTACGGAGGATCACA 86 111 317 Antisense
Sequence Source Affymetrix Proprietary Database